Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CPH39_RS09145 Genome accession   NZ_CP043542
Coordinates   1921208..1922635 (-) Length   475 a.a.
NCBI ID   WP_089553450.1    Uniprot ID   -
Organism   Escherichia coli strain F2_81     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916208..1927635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPH39_RS09115 (CPH39_09220) yeeZ 1916263..1917087 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CPH39_RS09120 (CPH39_09225) yeeY 1917133..1918062 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  CPH39_RS09125 (CPH39_09230) yoeI 1918277..1918339 (+) 63 WP_010723108.1 membrane protein YoeI -
  CPH39_RS09130 (CPH39_09235) plaP 1918329..1919687 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CPH39_RS09135 (CPH39_09240) tsuA 1919866..1920924 (+) 1059 WP_096220338.1 thiosulfate utilization transporter TsuA/YeeE -
  CPH39_RS09140 (CPH39_09245) tsuB 1920938..1921165 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CPH39_RS09145 (CPH39_09250) sbcB 1921208..1922635 (-) 1428 WP_089553450.1 exodeoxyribonuclease I Machinery gene
  CPH39_RS09150 (CPH39_09255) dacD 1922844..1924010 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CPH39_RS09155 (CPH39_09260) sbmC 1924129..1924602 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  CPH39_RS09160 (CPH39_09265) yeeA 1924800..1925858 (+) 1059 WP_001200891.1 FUSC family protein -
  CPH39_RS09165 (CPH39_09270) tmaR 1926030..1926359 (+) 330 WP_000450409.1 DUF496 family protein -
  CPH39_RS09170 (CPH39_09275) - 1926460..1926756 (-) 297 Protein_1812 EutP/PduV family microcompartment system protein -
  CPH39_RS09175 (CPH39_09280) - 1926735..1927094 (+) 360 WP_053884212.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6102

>NTDB_id=338290 CPH39_RS09145 WP_089553450.1 1921208..1922635(-) (sbcB) [Escherichia coli strain F2_81]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENNDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=338290 CPH39_RS09145 WP_089553450.1 1921208..1922635(-) (sbcB) [Escherichia coli strain F2_81]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CAGATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATAATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577

Multiple sequence alignment