Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EQH20_RS02285 Genome accession   NZ_CP035260
Coordinates   466018..466749 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 461018..471749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS02265 - 462626..463259 (+) 634 Protein_449 DJ-1/PfpI family protein -
  EQH20_RS02270 (EQH20_02405) dnaJ 463429..464565 (+) 1137 WP_001066288.1 molecular chaperone DnaJ -
  EQH20_RS02275 (EQH20_02415) - 465243..465530 (-) 288 WP_000777760.1 hypothetical protein -
  EQH20_RS02280 (EQH20_02420) - 465540..465950 (-) 411 WP_001278301.1 HIT family protein -
  EQH20_RS02285 (EQH20_02425) pptA 466018..466749 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH20_RS02290 (EQH20_02430) - 466746..467795 (+) 1050 WP_061476401.1 ABC transporter permease -
  EQH20_RS02295 (EQH20_02440) - 467963..468292 (-) 330 WP_000132572.1 hypothetical protein -
  EQH20_RS02300 (EQH20_02445) - 468568..468906 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  EQH20_RS02305 (EQH20_02450) comE/blpR 468911..469648 (+) 738 WP_061476395.1 response regulator transcription factor Regulator
  EQH20_RS02310 (EQH20_02455) - 469662..471002 (+) 1341 WP_061647476.1 sensor histidine kinase -
  EQH20_RS02315 (EQH20_02460) blpC 471047..471202 (-) 156 WP_000358810.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=338290 EQH20_RS02285 WP_000889923.1 466018..466749(+) (pptA) [Streptococcus pneumoniae strain TVO_1901925]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=338290 EQH20_RS02285 WP_000889923.1 466018..466749(+) (pptA) [Streptococcus pneumoniae strain TVO_1901925]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGCTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment