Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   MDS_RS12070 Genome accession   NC_015410
Coordinates   2618192..2618836 (+) Length   214 a.a.
NCBI ID   WP_041769442.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina NK-01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2613192..2623836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS12030 (MDS_2388) - 2613518..2614522 (-) 1005 WP_013715508.1 glutathione S-transferase family protein -
  MDS_RS12035 (MDS_2389) - 2614608..2615591 (-) 984 WP_013715509.1 glycosyl transferase family protein -
  MDS_RS12040 (MDS_2390) - 2615588..2615923 (-) 336 WP_013715510.1 TusE/DsrC/DsvC family sulfur relay protein -
  MDS_RS12045 (MDS_2391) tusB 2615920..2616219 (-) 300 WP_013715511.1 sulfurtransferase complex subunit TusB -
  MDS_RS12050 (MDS_2392) tusC 2616219..2616578 (-) 360 WP_013715512.1 sulfurtransferase complex subunit TusC -
  MDS_RS12055 (MDS_2393) tusD 2616579..2616971 (-) 393 WP_013715513.1 sulfurtransferase complex subunit TusD -
  MDS_RS12060 (MDS_2394) - 2617106..2617774 (-) 669 WP_013715514.1 Bax inhibitor-1/YccA family protein -
  MDS_RS12070 (MDS_2395) letA 2618192..2618836 (+) 645 WP_041769442.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  MDS_RS12075 (MDS_2396) uvrC 2618839..2620662 (+) 1824 WP_013715516.1 excinuclease ABC subunit UvrC -
  MDS_RS12080 (MDS_2397) pgsA 2620696..2621256 (+) 561 WP_013715517.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MDS_RS12100 (MDS_2398) - 2621890..2622585 (-) 696 WP_013715518.1 RES family NAD+ phosphorylase -
  MDS_RS12105 (MDS_2399) - 2622585..2622992 (-) 408 WP_013715519.1 antitoxin Xre-like helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23555.56 Da        Isoelectric Point: 6.1103

>NTDB_id=33818 MDS_RS12070 WP_041769442.1 2618192..2618836(+) (letA) [Ectopseudomonas mendocina NK-01]
MIRVLVVDDHDLVRTGITRMLADIEGLQVVGEACTGEEALLKVRELKPDVVLMDVKMPGIGGLEATRKLMRSHPDIKVVA
VTVCEEDPFPTRLLQAGAAGYLTKGAALDEMVQAIRLVFAGQRYIDPQIAQQLALKSFQPQTSGSPFDLLSEREIQIALM
IANCHKVQNISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAVS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=33818 MDS_RS12070 WP_041769442.1 2618192..2618836(+) (letA) [Ectopseudomonas mendocina NK-01]
TTGATTAGGGTCTTGGTTGTCGACGATCACGATCTGGTTCGCACGGGCATCACCCGCATGCTGGCTGACATCGAAGGTCT
GCAAGTCGTAGGTGAAGCCTGCACCGGCGAAGAAGCCCTGCTCAAGGTTCGCGAACTCAAGCCCGACGTCGTTCTGATGG
ACGTCAAGATGCCCGGCATCGGCGGTCTGGAGGCCACCCGCAAACTGATGCGCAGCCACCCCGACATCAAGGTCGTCGCT
GTCACCGTATGCGAGGAAGATCCATTCCCGACTCGCCTGCTGCAGGCCGGCGCCGCTGGTTATTTGACCAAGGGCGCGGC
GCTGGATGAAATGGTGCAAGCCATTCGCCTGGTGTTTGCCGGCCAGCGCTACATCGACCCGCAAATCGCCCAGCAACTGG
CGCTGAAATCCTTCCAGCCGCAAACCAGTGGTTCGCCGTTCGATCTTCTATCCGAACGCGAAATCCAGATCGCGCTGATG
ATCGCCAACTGCCACAAGGTGCAGAACATCTCGGACAAGCTGTGCCTGTCGCCGAAGACGGTCAATACCTATCGTTACCG
CATCTTCGAGAAGCTCTCCATCACCAGCGACGTTGAGCTGGCCCTGCTTGCGGTACGCCACGGCATGGTCGACGCCGTCA
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.189

99.065

0.547
  letA Legionella pneumophila strain ERS1305867

55.189

99.065

0.547

Multiple sequence alignment