Detailed information NTG0338082

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: FTN78_RS12270
• Genome accession: NZ_CP043523
• Coordinates: 2376450..2377526 (-)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2371450..2382526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FTN78_RS12250 (FTN78_chr2455)	galE	2373480..2374460 (+)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-
FTN78_RS12255 (FTN78_chr2456)	-	2374583..2375527 (+)	945	WP_010906244.1	alpha/beta hydrolase	-
FTN78_RS12260 (FTN78_chr2457)	-	2375540..2375917 (-)	378	WP_010906243.1	MerR family transcriptional regulator	-
FTN78_RS12265 (FTN78_chr2458)	-	2375995..2376363 (+)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
FTN78_RS12270 (FTN78_chr2459)	recF	2376450..2377526 (-)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
FTN78_RS12275 (FTN78_chr2460)	yaaA	2377526..2377888 (-)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
FTN78_RS12280 (FTN78_chr2461)	yfmF	2378086..2379372 (+)	1287	WP_021214872.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
FTN78_RS12285 (FTN78_chr2462)	yfmH	2379362..2380645 (+)	1284	WP_191904765.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
FTN78_RS12290 (FTN78_chr2463)	-	2380857..2381753 (+)	897	WP_010906239.1	RodZ family helix-turn-helix domain-containing protein	-
FTN78_RS12295 (FTN78_chr2464)	pgsA	2381794..2382366 (+)	573	WP_010906238.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=338082 FTN78_RS12270 WP_010906242.1 2376450..2377526(-) (recF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=338082 FTN78_RS12270 WP_010906242.1 2376450..2377526(-) (recF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447