Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EQH26_RS02690 Genome accession   NZ_CP035254
Coordinates   518894..519625 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 513894..524625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS02665 (EQH26_02840) - 515631..515987 (+) 357 WP_000114361.1 hypothetical protein -
  EQH26_RS02670 (EQH26_02845) dnaJ 516260..517396 (+) 1137 WP_001066305.1 molecular chaperone DnaJ -
  EQH26_RS02675 - 517718..517957 (-) 240 WP_001813906.1 hypothetical protein -
  EQH26_RS02680 (EQH26_02855) - 518119..518406 (-) 288 WP_000777760.1 hypothetical protein -
  EQH26_RS02685 (EQH26_02860) - 518416..518826 (-) 411 WP_001278301.1 HIT family protein -
  EQH26_RS02690 (EQH26_02865) pptA 518894..519625 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH26_RS02695 (EQH26_02870) - 519622..520671 (+) 1050 WP_000653767.1 ABC transporter permease -
  EQH26_RS02700 (EQH26_02875) - 520839..521168 (-) 330 WP_238126626.1 helicase BlpT -
  EQH26_RS02705 (EQH26_02880) - 521445..521783 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  EQH26_RS02710 (EQH26_02885) comE/blpR 521788..522525 (+) 738 WP_001219122.1 LytTR family DNA-binding domain-containing protein Regulator
  EQH26_RS02715 (EQH26_02890) - 522538..523878 (+) 1341 WP_000275285.1 sensor histidine kinase -
  EQH26_RS02720 (EQH26_02895) blpC 523922..524077 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=337896 EQH26_RS02690 WP_000889923.1 518894..519625(+) (pptA) [Streptococcus pneumoniae strain TVO_1901932]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=337896 EQH26_RS02690 WP_000889923.1 518894..519625(+) (pptA) [Streptococcus pneumoniae strain TVO_1901932]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAAATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTATTAAAGATGTTCCGTCTGGAACAGAAATTGGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTATTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment