Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SOR_RS09635 Genome accession   NC_015291
Coordinates   1941475..1942572 (+) Length   365 a.a.
NCBI ID   WP_000266694.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1936475..1947572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS09610 (SOR_1970) pgsA 1937006..1937551 (-) 546 WP_000712148.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SOR_RS09615 (SOR_1971) rodZ 1937562..1938383 (-) 822 WP_001227973.1 cytoskeleton protein RodZ -
  SOR_RS09620 (SOR_1972) yfmH 1938419..1939702 (-) 1284 WP_000169593.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SOR_RS09625 (SOR_1973) yfmF 1939699..1940949 (-) 1251 WP_000424573.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SOR_RS09630 (SOR_1974) yaaA 1941110..1941472 (+) 363 WP_000455882.1 S4 domain-containing protein YaaA -
  SOR_RS09635 (SOR_1975) recF 1941475..1942572 (+) 1098 WP_000266694.1 DNA replication/repair protein RecF Machinery gene
  SOR_RS09640 (SOR_1976) guaB 1942626..1944104 (-) 1479 WP_000073406.1 IMP dehydrogenase -
  SOR_RS09645 (SOR_1977) trpS 1944265..1945290 (-) 1026 WP_000165470.1 tryptophan--tRNA ligase -
  SOR_RS09650 (SOR_1978) - 1945485..1947107 (+) 1623 WP_000958783.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 42045.23 Da        Isoelectric Point: 9.4492

>NTDB_id=33768 SOR_RS09635 WP_000266694.1 1941475..1942572(+) (recF) [Streptococcus oralis Uo5]
MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDNEQLRLSGLLQKKTSS
IPLEIDLTPKGRVTKVNYLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR
NTYLKSSQKIDETFLSVLDDQLVEYGCRVIRHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTDEEQLTSSFKM
ALEKSRSRDLFKKNTGVGPHRDDITFYINAIDASFGSQGQHRSLVLSVKLAEIELMESITNESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFNIQNGKISVNQT

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=33768 SOR_RS09635 WP_000266694.1 1941475..1942572(+) (recF) [Streptococcus oralis Uo5]
ATGTGGCTCCAACATTTAACAATTAAAACCTTTCGAAACTACAAAGAGGCAAAAATTGATTTTAATCCAAAATTAAACGT
CTTTCTAGGTCAAAATGCACAAGGAAAAACTAATATTCTAGAAGCAATCTATTTCTTGGCCTTGACACGTAGTCATAGGA
CTCGTACAGATAAAAATCTCATTCATTTTGATAACGAGCAACTCCGTCTTTCTGGCTTGCTACAGAAAAAAACAAGCTCT
ATCCCTCTAGAAATTGATTTAACACCAAAAGGGCGTGTGACTAAGGTCAATTACTTAAAACAAGCTCGCCTATCAGACTA
CATTGGACATATGAATGTTGTCCTCTTCGCACCTGAAGATCTCCAACTAATTAAAGGAGCGCCTTCTGTCCGTCGAAAGT
TTATAGACATCGAACTGGGACAAATTAAACCAATCTACTTGTCAGACTTGTCAAACTATAACCATATACTCAAGCAAAGA
AATACTTACCTAAAATCCAGTCAAAAGATTGACGAAACATTTCTGTCGGTCTTAGATGATCAGTTAGTAGAGTATGGATG
TCGCGTCATAAGGCATCGTATAAAATTCATTAAAGACCTAGAGAAATTTGGTCAAAAAAAACACTTAGAAATTTCAAATA
AATTAGAAGAGTTGTCAATATCTTATCAATCATCTGTCAACTTCACTGATGAAGAACAGCTAACAAGTTCTTTTAAAATG
GCTTTAGAGAAAAGCAGATCAAGAGATTTGTTCAAAAAGAATACTGGTGTTGGCCCTCATCGAGATGACATTACTTTCTA
TATCAATGCTATTGATGCTAGTTTTGGAAGTCAAGGTCAACATCGTAGTCTTGTACTTTCTGTCAAACTAGCAGAGATTG
AGCTAATGGAAAGTATTACCAACGAGTCTCCAATACTCTTGCTTGACGATGTTATGAGCGAACTTGACAACACACGGCAA
CTAAAATTACTAGAAACCATTTCTCAATCTATCCAGACCTTTATCACAACAACAAGTTTAGACCACTTACAAAACTTGCC
AGAAAACCTTAGTATCTTCAATATTCAAAACGGTAAAATTTCTGTAAATCAAACTTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

87.879

99.452

0.874
  recF Bacillus subtilis subsp. subtilis str. 168

45.652

100

0.46

Multiple sequence alignment