Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EQH32_RS08685 Genome accession   NZ_CP035248
Coordinates   1705582..1706292 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain TVO_1901939     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700582..1711292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH32_RS08670 (EQH32_09125) - 1701237..1701485 (-) 249 WP_000364990.1 YneF family protein -
  EQH32_RS08675 (EQH32_09130) treC 1701627..1703252 (-) 1626 WP_000171233.1 alpha,alpha-phosphotrehalase -
  EQH32_RS08680 (EQH32_09140) treP 1703430..1705397 (-) 1968 WP_000514349.1 PTS system trehalose-specific EIIBC component -
  EQH32_RS08685 (EQH32_09145) treR 1705582..1706292 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQH32_RS08690 (EQH32_09150) - 1706325..1707128 (-) 804 WP_000157659.1 ABC transporter ATP-binding protein -
  EQH32_RS08695 (EQH32_09155) - 1707141..1708018 (-) 878 Protein_1739 ABC transporter permease -
  EQH32_RS08700 (EQH32_09160) - 1708063..1708839 (-) 777 Protein_1740 ABC transporter substrate-binding protein -
  EQH32_RS08705 (EQH32_09165) - 1709393..1710346 (-) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=337604 EQH32_RS08685 WP_000760673.1 1705582..1706292(+) (treR) [Streptococcus pneumoniae strain TVO_1901939]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=337604 EQH32_RS08685 WP_000760673.1 1705582..1706292(+) (treR) [Streptococcus pneumoniae strain TVO_1901939]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment