Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EQH34_RS06920 Genome accession   NZ_CP035246
Coordinates   1389841..1391073 (-) Length   410 a.a.
NCBI ID   WP_000106346.1    Uniprot ID   A0A064C077
Organism   Streptococcus pneumoniae strain TVO_1901941     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384841..1396073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH34_RS06890 (EQH34_07330) - 1385031..1385996 (+) 966 WP_000081011.1 NAD(P)/FAD-dependent oxidoreductase -
  EQH34_RS06895 (EQH34_07335) whiA 1386030..1386941 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  EQH34_RS06900 (EQH34_07340) - 1386938..1387915 (-) 978 WP_001231086.1 YvcK family protein -
  EQH34_RS06905 (EQH34_07345) rapZ 1387912..1388802 (-) 891 WP_000163033.1 RNase adapter RapZ -
  EQH34_RS06910 (EQH34_07350) - 1388854..1389234 (-) 381 WP_001140412.1 RidA family protein -
  EQH34_RS06915 (EQH34_07355) yihA 1389245..1389832 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EQH34_RS06920 (EQH34_07360) clpX 1389841..1391073 (-) 1233 WP_000106346.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EQH34_RS06925 (EQH34_07365) - 1391105..1391275 (-) 171 WP_000442275.1 hypothetical protein -
  EQH34_RS06930 (EQH34_07370) - 1391275..1391781 (-) 507 WP_000162484.1 dihydrofolate reductase -
  EQH34_RS06935 (EQH34_07375) - 1391911..1392429 (-) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  EQH34_RS06940 (EQH34_07380) - 1392979..1394046 (+) 1068 Protein_1390 ISL3 family transposase -
  EQH34_RS06945 (EQH34_07385) - 1394205..1395551 (+) 1347 WP_001842410.1 IS1380-like element ISSpn5 family transposase -
  EQH34_RS06950 (EQH34_07390) - 1395743..1395942 (+) 200 Protein_1392 transposase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 4.4550

>NTDB_id=337443 EQH34_RS06920 WP_000106346.1 1389841..1391073(-) (clpX) [Streptococcus pneumoniae strain TVO_1901941]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=337443 EQH34_RS06920 WP_000106346.1 1389841..1391073(-) (clpX) [Streptococcus pneumoniae strain TVO_1901941]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C077

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment