Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SOR_RS07930 Genome accession   NC_015291
Coordinates   1575665..1578031 (+) Length   788 a.a.
NCBI ID   WP_000454461.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1570665..1583031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS07905 (SOR_1616) mutS/mutS2 1570667..1573003 (-) 2337 WP_001092923.1 endonuclease MutS2 Machinery gene
  SOR_RS07910 (SOR_1617) - 1573104..1573652 (-) 549 WP_000623536.1 CvpA family protein -
  SOR_RS07915 (SOR_1618) zapA 1573649..1573951 (-) 303 WP_000002028.1 cell division protein ZapA -
  SOR_RS07920 (SOR_1619) rnhC 1574038..1574919 (+) 882 WP_000146902.1 ribonuclease HIII -
  SOR_RS07925 (SOR_1620) lepB 1574923..1575537 (+) 615 WP_001083983.1 signal peptidase I -
  SOR_RS07930 (SOR_1622) recD/recD2/recDB 1575665..1578031 (+) 2367 WP_000454461.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SOR_RS07935 (SOR_1623) tig 1578079..1579362 (-) 1284 WP_000116505.1 trigger factor -
  SOR_RS07940 (SOR_1624) - 1579453..1580109 (-) 657 WP_001054498.1 DNA alkylation repair protein -
  SOR_RS07945 (SOR_1625) vraR 1580110..1580742 (-) 633 WP_000698406.1 response regulator transcription factor Regulator
  SOR_RS07950 (SOR_1626) - 1580753..1581751 (-) 999 WP_000744938.1 sensor histidine kinase -
  SOR_RS07955 (SOR_1627) liaF 1581748..1582446 (-) 699 WP_000714483.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88335.21 Da        Isoelectric Point: 4.5894

>NTDB_id=33742 SOR_RS07930 WP_000454461.1 1575665..1578031(+) (recD/recD2/recDB) [Streptococcus oralis Uo5]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLEGISGLSAKNREAFLSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKDETLDIVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELSHLIEEDKVQQIDTKIFDNSLFFAEEGIHSHLVRILEKGKQKSQDLETIHKH
IATVEQELGIQYDDIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLKKKSNLPILLAAPTGRAARRMN
ELTGLSSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGVALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQYFYRKGGKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVIYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFKDLVEATDQTSPAPSETTNQEDSPLSYILTEENWSSIHAMIGITDVDLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=33742 SOR_RS07930 WP_000454461.1 1575665..1578031(+) (recD/recD2/recDB) [Streptococcus oralis Uo5]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGTAATTTTTATCGTATTCTCCTCCTAGA
TATCGAAGATACCAATGCGGAGGACTTTGACGATTTTGAAATCATCGTTACAGGAACCATGGCTGACGTGATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATCGTTCAGCACTCCAAGTATGGAGAACAGCTACAGATCAGTCGTTATGAGAGAGCA
AAACCCACTAGTAAGGGTCTAGTCAAGTACTTTTCTAGCAGCCATTTCAAGGGAATTGGACTCAAGACTGCCCAGAAAAT
CGTTGATAGCTACGGTGACAATACCATAGACGAAATTCTGGAGCATCCTGAAAAGCTGGAAGGCATCTCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTTCTTTCCACCCTCCGTCTCAACTATGGGACAGAGATGGTTTTGGCAAAACTAGCCAACTAC
GGCATTCCCAATAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGACGAAACGCTGGATATTGTCGAAAATTATCCCTA
CCAGCTGGTTGAGGATATCAAGGGCTTGGGCTTTACCATTGCTGACCAACTAGCAGCCGAACTAGGTATCGAAAGCCAAG
CTCCCGAGCGCTTCCGCGCTGGCCTTGTCCACAGTCTCTTTCAAGGCTGTATGGATACGGGCGATACCTATATGGAAGCC
CGAGATTTGCTGGAACAAACCCTGACTCTCCTCGAATCTTCCCGTCCCGTGGAACTCGATCCCAGCCAAGTCGCTCAGGA
ATTATCTCATCTAATTGAAGAGGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAATAGCCTCTTTTTCGCTGAAG
AAGGCATCCACAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAGAGCCAAGATCTAGAAACCATTCACAAGCAT
ATCGCTACTGTCGAGCAAGAACTGGGGATTCAGTACGATGACATTCAAAAGCAGGCTATCTGCGATGCCATCCAGAACAA
GGTCTTTATCCTAACAGGTGGACCTGGTACTGGTAAGACAACTGTTATCAATGGTATCATCGCTGTCTATGCCCTGCTTG
AAGGACTCGATCTCAAAAAAAAGAGCAACCTCCCTATTCTTCTCGCTGCACCAACTGGTCGAGCCGCTCGGCGCATGAAT
GAATTGACAGGATTGTCAAGTGCTACTATACATCGCCATTTGGGGATGACGGGAGACGATGATACCAGTCATCTAGATGA
TTATCTGGATGCCGATTTTATCATTGTAGATGAGTTTTCCATGGTGGATACTTGGCTAGCCAACCAGCTCTTCTCCAATA
TCTCCTCAAACAGTAAAATCCTCATCGTGGGAGACAGTGACCAGTTGCCTTCTGTCAGTCCTGGACAAGTCCTGGCTGAC
CTGCTCCAGATACCCCTGATTCCCCAGACTCGCTTGGAACGGATTTACCGTCAGAGCGAAGAATCAACCATCGTTACCTT
GGCAAGTCAGATTCGACAAGGCATCCTGCCAGCTGACTTTACCCAGAAAAAAGCAGACCGCTCCTACTTTGAAATCGCTA
GTGGCCATATCCCAGCTACCATTGAGAAAATTCTTGGTGTCGCACTCAGAAGTGGCATTCCGGCTCGCGATATTCAGGTG
CTGGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCACCACAAAA
AGACCAACTCAGTTTTGAAGCTCCCCAATACTTCTATCGCAAGGGTGGCAAGGTCATTCACCTAGTCAACGATGCCGAAG
TCAATGTCTTTAACGGAGACCTAGGCTACATCACAGACCTGATTCCTGGAAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTCATCTATCCACGCAACGAATGGTACAAGATTCGACTAGCCTATGCCATGAGTAT
CCATAAGTCTCAGGGAAGTGAGTTTCCTGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGGGCCAAGAGCAAGCTCATCCTTCTTGGTGAATTACAGGCCTTCGACTATGCAGTCAAG
CATATCGGGACTGCCCGTAAGACCTATCTGATTGAGCGCTTTAAGGATCTGGTTGAAGCAACTGACCAAACCAGCCCAGC
TCCTAGCGAAACAACAAATCAAGAGGATTCTCCTCTATCCTACATCCTCACCGAGGAAAACTGGTCTAGTATTCACGCTA
TGATTGGGATTACAGATGTCGATCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.854

95.812

0.401

Multiple sequence alignment