Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SOR_RS07945 Genome accession   NC_015291
Coordinates   1580110..1580742 (-) Length   210 a.a.
NCBI ID   WP_000698406.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575110..1585742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS07930 (SOR_1622) recD/recD2/recDB 1575665..1578031 (+) 2367 WP_000454461.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SOR_RS07935 (SOR_1623) tig 1578079..1579362 (-) 1284 WP_000116505.1 trigger factor -
  SOR_RS07940 (SOR_1624) - 1579453..1580109 (-) 657 WP_001054498.1 DNA alkylation repair protein -
  SOR_RS07945 (SOR_1625) vraR 1580110..1580742 (-) 633 WP_000698406.1 response regulator transcription factor Regulator
  SOR_RS07950 (SOR_1626) - 1580753..1581751 (-) 999 WP_000744938.1 sensor histidine kinase -
  SOR_RS07955 (SOR_1627) liaF 1581748..1582446 (-) 699 WP_000714483.1 cell wall-active antibiotics response protein LiaF -
  SOR_RS07960 (SOR_1628) fni 1582614..1583615 (-) 1002 WP_000210654.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  SOR_RS07965 (SOR_1629) - 1583599..1584606 (-) 1008 WP_000562392.1 phosphomevalonate kinase -
  SOR_RS07970 (SOR_1630) mvaD 1584593..1585546 (-) 954 WP_000375376.1 diphosphomevalonate decarboxylase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23576.10 Da        Isoelectric Point: 4.6397

>NTDB_id=33743 SOR_RS07945 WP_000698406.1 1580110..1580742(-) (vraR) [Streptococcus oralis Uo5]
MKILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGAQGIDLALELRPDVIVMDIVMPEMNGIDATLAILKEWPEAKILIV
TSYLDNEKIMPVLNAGARGYMLKTSSADELLNAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTARERDVLQLIAKGY
ENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLVGQEDF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=33743 SOR_RS07945 WP_000698406.1 1580110..1580742(-) (vraR) [Streptococcus oralis Uo5]
ATGAAAATTTTACTGGTAGATGACCATGAAATGGTCCGATTGGGCTTGAAAAGCTATTTTGACCTTCAAGACGATGTAGA
AGTTGTGGGCGAAGCTGCCAATGGGGCTCAAGGTATTGACTTGGCCTTGGAATTGCGTCCAGATGTCATTGTCATGGATA
TCGTCATGCCTGAGATGAATGGGATTGATGCAACCTTAGCCATCCTCAAAGAATGGCCTGAAGCCAAGATTTTGATTGTG
ACCTCTTACCTAGACAATGAAAAAATCATGCCAGTCTTAAATGCTGGGGCTAGGGGCTATATGCTCAAGACTTCAAGTGC
AGACGAATTACTGAACGCTGTTCGTAAGGTTGCTGCTGGAGAGCTTGCTATTGAACAAGAGGTCAGCAAGAAGGTCGAAT
ACCACCGCAATCATATAGAGCTTCATGAGGAACTGACTGCGCGTGAACGAGATGTCCTACAACTCATCGCCAAGGGCTAT
GAAAATCAGCGCATCGCAGACGAACTCTTTATCTCCCTAAAGACGGTCAAAACCCATGTGTCTAATATCCTAGCCAAGCT
TGAGGTCAGCGATCGCACCCAGGCTGCGGTCTATGCCTTTCAGCACCACTTGGTAGGGCAGGAGGATTTTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-115)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.942

98.095

0.51
  degU Bacillus subtilis subsp. subtilis str. 168

38.839

100

0.414

Multiple sequence alignment