Detailed information NTG0033743

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LHK_RS01115
• Genome accession: NC_012559
• Coordinates: 232215..233417 (-)
• Length: 400 a.a.
• NCBI ID: WP_012695724.1
• Uniprot ID: C1DAP8
• Organism: Laribacter hongkongensis HLHK9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 227215..238417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LHK_RS01100 (LHK_00231)	rpoH	229595..230443 (-)	849	WP_012695721.1	RNA polymerase sigma factor RpoH	-
LHK_RS01105 (LHK_00232)	ftsX	230627..231535 (-)	909	WP_012695722.1	permease-like cell division protein FtsX	-
LHK_RS01110 (LHK_00233)	ftsE	231532..232185 (-)	654	WP_012695723.1	cell division ATP-binding protein FtsE	-
LHK_RS01115 (LHK_00234)	pilA	232215..233417 (-)	1203	WP_012695724.1	signal recognition particle-docking protein FtsY	Machinery gene
LHK_RS01120 (LHK_00235)	-	233505..234887 (+)	1383	WP_012695725.1	pitrilysin family protein	-
LHK_RS01125 (LHK_00236)	-	234877..236232 (+)	1356	WP_012695726.1	pitrilysin family protein	-
LHK_RS01130 (LHK_00237)	rsmD	236213..236788 (+)	576	WP_012695727.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LHK_RS01135 (LHK_00238)	-	236846..237097 (+)	252	WP_012695728.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 42432.59 Da
• Isoelectric Point: 5.3486

>NTDB_id=33743 LHK_RS01115 WP_012695724.1 232215..233417(-) (pilA) [Laribacter hongkongensis HLHK9]
MFSFFKRKSKPDPQTGHEAAPPAPASEAPAGSENTISQPAATELPVTTPAMQEEAAAVAVEPEPQAIPEPEPEPAAPVAA
VEPSPVPVAVASEAAAPRKQSWSERLKAGLSKTRDKLGKQLAGLFGGGQIDEDLYDELETILLTSDMGVAATRHLLEDVR
RRVSLKGLKDASQLKDALKESLMDLIGPLEKPLNLDRSGPLVIMMAGVNGAGKTTSIGKLAKYFQGHRKSVLLAAGDTFR
AAAREQLAEWGARNQVTVISQQGGDAAAVCFDAVQAAQARKIDIVLADTAGRLPTQLHLMEEIRKVKRVISKALPQAPHE
ILLVLDANTGQNALAQVKAFDDALGLTGLILTKLDGTAKGGVIAAIARERPVPMYFVGVGETLDDLRPFSAREYVDALFD

Nucleotide

• Length: 1203 bp

>NTDB_id=33743 LHK_RS01115 WP_012695724.1 232215..233417(-) (pilA) [Laribacter hongkongensis HLHK9]
ATGTTCAGCTTTTTCAAACGCAAATCCAAACCCGATCCGCAAACCGGCCACGAAGCCGCTCCCCCTGCTCCGGCCAGCGA
GGCGCCGGCCGGCAGCGAAAACACCATCAGCCAGCCGGCAGCCACCGAACTGCCCGTAACGACTCCGGCCATGCAGGAGG
AGGCAGCAGCGGTCGCCGTGGAGCCGGAACCACAGGCCATCCCGGAACCTGAACCCGAACCGGCAGCGCCTGTCGCAGCG
GTCGAACCTTCTCCGGTCCCCGTGGCTGTCGCCAGCGAAGCCGCTGCACCGCGCAAGCAGTCGTGGAGCGAACGCCTCAA
GGCCGGCCTCTCCAAGACCCGCGACAAGCTCGGCAAGCAGCTGGCCGGCCTGTTTGGCGGCGGCCAGATCGACGAGGACC
TGTACGACGAGCTGGAAACCATCCTGCTGACCTCCGACATGGGCGTCGCTGCCACCCGGCATCTCCTGGAAGATGTGCGC
CGCCGCGTCAGTCTCAAGGGCCTGAAAGATGCCAGCCAGCTGAAAGATGCATTGAAAGAATCGCTGATGGACCTGATCGG
TCCCTTAGAAAAACCGCTGAACCTGGATCGCAGCGGTCCGCTGGTCATCATGATGGCAGGCGTCAACGGAGCCGGCAAAA
CCACCTCCATCGGCAAACTGGCCAAGTATTTCCAGGGACACCGGAAAAGCGTGCTGCTGGCTGCCGGCGACACCTTTCGC
GCAGCTGCGCGCGAGCAGCTGGCCGAATGGGGGGCGCGCAACCAAGTGACGGTCATCAGCCAGCAGGGCGGTGATGCGGC
AGCGGTGTGCTTTGATGCCGTCCAGGCCGCACAGGCACGCAAGATCGACATCGTGCTGGCCGATACCGCCGGGCGACTGC
CGACCCAGCTGCACCTGATGGAGGAAATCCGCAAGGTCAAGCGCGTCATCAGCAAGGCGCTGCCGCAGGCCCCGCACGAA
ATCCTGCTGGTGCTGGATGCCAACACCGGGCAGAACGCGCTGGCACAGGTCAAGGCATTCGATGATGCGCTGGGACTGAC
CGGCCTGATCCTGACCAAGCTGGACGGCACGGCCAAGGGTGGCGTGATCGCCGCCATCGCCCGCGAACGGCCGGTACCGA
TGTACTTTGTCGGTGTCGGTGAAACACTGGACGACCTGCGGCCGTTCTCGGCACGCGAGTACGTGGACGCCCTGTTCGAC
TAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (201-399)

• SRP54-type protein, helical bundle domain (SRP54_N) (117-182)

3D structure

• AlphaFold DB: C1DAP8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	60.333	100	0.635