Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DEIDE_RS02200 Genome accession   NC_012526
Coordinates   443437..443817 (-) Length   126 a.a.
NCBI ID   WP_012692333.1    Uniprot ID   C1CZV8
Organism   Deinococcus deserti VCD115     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438437..448817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIDE_RS02185 (Deide_03840) - 438899..439993 (+) 1095 WP_012692330.1 methyltransferase domain-containing protein -
  DEIDE_RS02190 (Deide_03850) - 440134..441141 (+) 1008 WP_012692331.1 Gfo/Idh/MocA family protein -
  DEIDE_RS02195 (Deide_03860) comEC 441122..443305 (-) 2184 WP_162485379.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DEIDE_RS02200 (Deide_03861) comEA 443437..443817 (-) 381 WP_012692333.1 ComEA family DNA-binding protein Machinery gene
  DEIDE_RS02205 (Deide_03870) rpmH 444059..444202 (+) 144 WP_012692334.1 50S ribosomal protein L34 -
  DEIDE_RS02210 (Deide_03871) rnpA 444291..444722 (+) 432 WP_041227349.1 ribonuclease P protein component -
  DEIDE_RS02215 (Deide_03875) yidD 444719..444973 (+) 255 WP_012692336.1 membrane protein insertion efficiency factor YidD -
  DEIDE_RS02220 (Deide_03880) yidC 444970..446598 (+) 1629 WP_012692337.1 membrane protein insertase YidC -
  DEIDE_RS02225 (Deide_03890) - 446753..447979 (-) 1227 WP_162485380.1 C39 family peptidase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13333.75 Da        Isoelectric Point: 10.2182

>NTDB_id=33724 DEIDE_RS02200 WP_012692333.1 443437..443817(-) (comEA) [Deinococcus deserti VCD115]
MLLKEQGWTAVLGAGVLLVGVLSLWPVLFPAPRLPAVTRVTLPPVSGAQPGRAPEYPTTSNITPLISGRLNLNIASMEQL
EALPKVGPALAQRIVEGRPYHSLADLDRVKGVGPGTLKVLEPLVSF

Nucleotide


Download         Length: 381 bp        

>NTDB_id=33724 DEIDE_RS02200 WP_012692333.1 443437..443817(-) (comEA) [Deinococcus deserti VCD115]
ATGCTTCTCAAGGAACAGGGATGGACCGCTGTACTCGGCGCCGGCGTGCTGCTGGTCGGGGTGCTGAGCCTTTGGCCGGT
GCTGTTTCCCGCCCCGCGTCTGCCGGCGGTGACCCGGGTCACCCTGCCGCCTGTCTCCGGGGCGCAGCCCGGCAGAGCCC
CCGAATACCCGACAACTTCCAACATCACCCCCCTGATTTCCGGCCGGCTGAACCTGAACATAGCTTCTATGGAGCAGCTT
GAAGCTCTGCCCAAAGTCGGCCCAGCTCTGGCCCAGCGAATTGTGGAAGGCCGGCCCTACCACTCGCTGGCCGACCTTGA
CCGGGTCAAGGGTGTAGGCCCAGGAACGCTGAAGGTCCTGGAGCCACTGGTGTCCTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CZV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.698

100

0.627
  comEA Thermus thermophilus HB27

45.545

80.159

0.365

Multiple sequence alignment