Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DEIDE_RS02195 Genome accession   NC_012526
Coordinates   441122..443305 (-) Length   727 a.a.
NCBI ID   WP_162485379.1    Uniprot ID   -
Organism   Deinococcus deserti VCD115     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436122..448305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIDE_RS02170 (Deide_03820) - 436359..437018 (-) 660 WP_012692327.1 potassium channel family protein -
  DEIDE_RS02175 (Deide_03830) - 437143..438519 (-) 1377 WP_012692328.1 TrkH family potassium uptake protein -
  DEIDE_RS02185 (Deide_03840) - 438899..439993 (+) 1095 WP_012692330.1 methyltransferase domain-containing protein -
  DEIDE_RS02190 (Deide_03850) - 440134..441141 (+) 1008 WP_012692331.1 Gfo/Idh/MocA family protein -
  DEIDE_RS02195 (Deide_03860) comEC 441122..443305 (-) 2184 WP_162485379.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DEIDE_RS02200 (Deide_03861) comEA 443437..443817 (-) 381 WP_012692333.1 ComEA family DNA-binding protein Machinery gene
  DEIDE_RS02205 (Deide_03870) rpmH 444059..444202 (+) 144 WP_012692334.1 50S ribosomal protein L34 -
  DEIDE_RS02210 (Deide_03871) rnpA 444291..444722 (+) 432 WP_041227349.1 ribonuclease P protein component -
  DEIDE_RS02215 (Deide_03875) yidD 444719..444973 (+) 255 WP_012692336.1 membrane protein insertion efficiency factor YidD -
  DEIDE_RS02220 (Deide_03880) yidC 444970..446598 (+) 1629 WP_012692337.1 membrane protein insertase YidC -
  DEIDE_RS02225 (Deide_03890) - 446753..447979 (-) 1227 WP_162485380.1 C39 family peptidase -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 76137.58 Da        Isoelectric Point: 9.4404

>NTDB_id=33723 DEIDE_RS02195 WP_162485379.1 441122..443305(-) (comEC) [Deinococcus deserti VCD115]
MERSGSRVAWTILLALGVIGGIQLGLGTQWSALVLVAGVALAVWDARPLLAGLTLIGAMAGYAALRTQQAQPDRLAPWTG
AQVTLRGDWDGQLLTLADPRGRVVLSPKPEARPGPLVVSGRLVRPEGQRTPGGFDQAAWLRAQGGLLTPAPTGVLAGARL
RQQAPEDGLRGWFRRGLVAGLPPREAALMQAIELGDRSEISRQEFQDGSGIRDAFARAGLAHLMALSGQNVALITALLLW
LLARSPLNVAVRYGLGAGLLLVYLFALVGVSPSITRAVIMGFTVLVALAVGRGRPDPLGLIALAATACLLAFPLWLTDVG
FQLSFLAVLALTQSARLADRLPERWPRALRLALSATVLAELGTLPVIASTFGELPLVGLPANLLAGGVMAVLVPLGFVAG
LLGPLGGVVNLAVEPLAGLLLGIVEVFGRAPVLSWGQIAPVGVASYALCALAGVLWLRGQVRAQVVLGTVLACTALTLLP
GQLRPAREVVFLDVGQGDATLIRVPQLTMLVDAGGSVGSDYDVGERTVIPALRAMGVHKLDVAVATHADTDHIEGLSSVL
RNLPVGELWIGHRKAGDPLVDDLLAVAAQRGVAVREVRRGDRVQADGATLTVLWPPGHVWSTEDNENSVALSLESGGWRT
ALLGDLPSDTEAALGTGHLDVLKAAHHGSRHSTGAALLQQAAPAHTVISVGRNTYGHPHPDVLEKLRQAGSRIWRTDQTG
TIRWPVP

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=33723 DEIDE_RS02195 WP_162485379.1 441122..443305(-) (comEC) [Deinococcus deserti VCD115]
ATGGAACGTTCGGGCAGCCGGGTGGCCTGGACGATTCTGCTGGCTCTGGGCGTCATTGGCGGGATTCAGCTGGGGCTGGG
AACTCAGTGGAGCGCGCTGGTTCTGGTGGCAGGCGTGGCTCTGGCGGTATGGGACGCGCGGCCGCTGCTGGCTGGACTCA
CGCTCATTGGCGCCATGGCGGGCTACGCGGCGCTGCGCACCCAGCAGGCGCAACCTGACCGGCTGGCGCCCTGGACAGGC
GCACAGGTCACCTTGCGCGGCGACTGGGACGGTCAGCTGCTGACCCTGGCTGACCCCCGGGGCCGGGTGGTCCTGTCGCC
CAAACCGGAGGCCCGTCCCGGACCGCTGGTGGTCAGCGGCCGGCTGGTCCGTCCTGAAGGTCAGCGCACCCCGGGTGGCT
TTGACCAGGCCGCGTGGTTGCGGGCTCAGGGAGGGCTGTTGACTCCGGCGCCCACCGGGGTTCTCGCCGGCGCCAGGCTC
CGGCAGCAGGCCCCTGAGGATGGTCTGCGCGGGTGGTTCCGCCGTGGGCTGGTGGCTGGTCTGCCTCCCCGGGAAGCCGC
CCTGATGCAGGCCATCGAACTGGGCGACCGAAGTGAGATCAGCCGTCAGGAATTCCAGGACGGCTCTGGTATACGCGACG
CTTTTGCCCGCGCCGGGCTGGCACACCTGATGGCCCTGTCGGGGCAGAATGTTGCGCTGATCACAGCCCTGCTGTTGTGG
CTGCTTGCCCGGTCCCCCTTGAACGTGGCTGTGCGTTACGGGCTGGGAGCCGGCCTGCTGCTGGTGTATCTGTTCGCACT
GGTCGGAGTGTCACCCAGCATCACGCGGGCGGTCATCATGGGCTTCACTGTCCTGGTGGCACTGGCAGTGGGCCGCGGCC
GACCCGACCCGCTGGGTCTGATTGCGCTGGCGGCCACAGCCTGTCTGCTGGCTTTTCCACTGTGGCTGACCGACGTGGGC
TTTCAGCTGTCGTTCCTGGCTGTGCTGGCCCTGACGCAGTCGGCGCGGCTGGCGGACCGGCTCCCAGAACGCTGGCCACG
TGCCTTGCGGCTGGCCCTGTCTGCCACCGTACTGGCGGAACTGGGCACACTCCCGGTTATTGCCTCCACGTTTGGAGAAC
TGCCGCTGGTGGGGCTGCCAGCCAATCTGCTGGCCGGAGGAGTGATGGCTGTGCTGGTCCCGCTGGGCTTCGTTGCGGGG
CTGCTGGGTCCCCTGGGCGGGGTCGTGAATCTGGCAGTCGAGCCACTGGCGGGCCTGCTGCTGGGCATCGTGGAGGTCTT
CGGGCGGGCTCCGGTGCTTTCCTGGGGCCAGATCGCACCTGTGGGTGTAGCTTCCTACGCGCTGTGTGCGCTGGCTGGCG
TGCTGTGGCTGCGGGGGCAGGTGCGCGCCCAGGTGGTTCTGGGGACCGTGCTGGCCTGCACCGCGCTGACGCTGCTGCCC
GGCCAGTTGCGGCCTGCCCGGGAGGTCGTCTTTCTGGACGTGGGTCAGGGCGACGCGACCCTGATCCGAGTGCCGCAGCT
GACCATGCTGGTGGACGCTGGAGGGTCTGTCGGCAGTGACTACGATGTGGGCGAACGGACGGTAATTCCTGCCCTGCGGG
CCATGGGCGTGCACAAGCTGGACGTAGCAGTGGCCACCCACGCCGATACGGATCACATCGAAGGTTTAAGCAGCGTTCTG
CGTAACCTGCCCGTCGGAGAGCTGTGGATCGGCCACCGCAAGGCGGGCGACCCCCTGGTGGATGACCTGCTGGCCGTCGC
TGCCCAGCGGGGCGTGGCGGTGCGTGAGGTCAGGCGAGGCGACCGTGTGCAGGCTGACGGCGCGACGCTTACCGTCCTGT
GGCCCCCAGGACACGTCTGGTCCACCGAGGACAATGAGAACAGTGTCGCCCTGAGCCTGGAGTCGGGGGGATGGCGCACA
GCGCTGCTGGGTGATTTGCCCAGCGACACTGAGGCGGCGTTGGGGACTGGCCATCTGGACGTGCTGAAAGCGGCGCATCA
CGGGAGCCGGCACAGCACCGGAGCAGCGCTGTTACAGCAGGCCGCCCCAGCCCATACGGTGATCAGCGTGGGACGCAATA
CCTACGGCCACCCCCATCCGGATGTTCTGGAGAAGCTGCGTCAGGCAGGCAGCCGGATCTGGCGCACCGATCAGACCGGA
ACCATCAGGTGGCCGGTGCCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(194-458)

Beta-lactamase superfamily domain (Lactamase_B_2)

(510-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.422

99.45

0.651

Multiple sequence alignment