Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EQH37_RS08810 Genome accession   NZ_CP035243
Coordinates   1776082..1777008 (-) Length   308 a.a.
NCBI ID   WP_054407486.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901946     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771082..1782008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH37_RS08790 (EQH37_09315) - 1771752..1772629 (-) 878 Protein_1767 ABC transporter permease -
  EQH37_RS08795 (EQH37_09320) - 1772641..1773450 (-) 810 Protein_1768 ABC transporter substrate-binding protein -
  EQH37_RS08800 (EQH37_09325) amiF 1774069..1774995 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  EQH37_RS08805 (EQH37_09330) amiE 1775006..1776073 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  EQH37_RS08810 (EQH37_09335) amiD 1776082..1777008 (-) 927 WP_054407486.1 oligopeptide ABC transporter permease OppC Regulator
  EQH37_RS08815 (EQH37_09340) amiC 1777008..1778504 (-) 1497 WP_054407484.1 ABC transporter permease Regulator
  EQH37_RS08820 (EQH37_09345) amiA3 1778571..1780550 (-) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34648.79 Da        Isoelectric Point: 9.7939

>NTDB_id=337222 EQH37_RS08810 WP_054407486.1 1776082..1777008(-) (amiD) [Streptococcus pneumoniae strain TVO_1901946]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLIIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=337222 EQH37_RS08810 WP_054407486.1 1776082..1777008(-) (amiD) [Streptococcus pneumoniae strain TVO_1901946]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGATTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment