Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SOR_RS04925 Genome accession   NC_015291
Coordinates   983287..986562 (-) Length   1091 a.a.
NCBI ID   WP_000772384.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 978287..991562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS04915 (SOR_1006) - 978441..979619 (-) 1179 WP_001130898.1 hypothetical protein -
  SOR_RS04920 (SOR_1007) rexA 979637..983290 (-) 3654 WP_000802714.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SOR_RS04925 (SOR_1008) rexB 983287..986562 (-) 3276 WP_000772384.1 ATP-dependent nuclease subunit B Machinery gene
  SOR_RS04930 (SOR_1009) - 986669..987088 (-) 420 WP_001138488.1 EVE domain-containing protein -
  SOR_RS04935 (SOR_1010) - 987081..987542 (-) 462 WP_001136805.1 MarR family winged helix-turn-helix transcriptional regulator -
  SOR_RS04940 (SOR_1011) - 987689..988498 (+) 810 WP_000593595.1 Cof-type HAD-IIB family hydrolase -
  SOR_RS04945 (SOR_1012) - 988544..989281 (-) 738 WP_000759204.1 TraX family protein -
  SOR_RS04950 (SOR_1013) aguB 989426..990301 (-) 876 WP_001246736.1 N-carbamoylputrescine amidase -
  SOR_RS04955 (SOR_1014) aguA 990311..991396 (-) 1086 WP_000969470.1 agmatine deiminase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124580.46 Da        Isoelectric Point: 6.2972

>NTDB_id=33720 SOR_RS04925 WP_000772384.1 983287..986562(-) (rexB) [Streptococcus oralis Uo5]
MKLLYTDIRTSLTEILTREAEELVAGGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPAKTS
LDDIGLGMAFYKCLAELDPKELRVYGAIKQEPQFIQQLIELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLAHLIEAIENGKVSSDFSQLALVIGGFTRFSAEEERVVDLLHRKGVEIVIGSYASKKAYTSPFAEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKIDSFDKASRLLESSYDFSELTLEIDEKDRKNLQIWSCLTQKEELELVARSIRQKLH
DHPELSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYLRYLGINGLPAFQQTFTKSHHGKFDLERLNALRLRVLEPLETIFASRKQKAENLLQKWSIFLKNTALSK
QMQDLTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQNLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENE
SKESAYLHELVSFGFRRREKTMNHKNLSKKDMGSYHSLLSSLVAYHQQSETNDTEQDLTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFEHALKLPA
ENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLVDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFSNFFNGLNSQLPTYLAALKGEGEQNFFGAMYLEMAEPVQSLLNVKSLA
GAVAEASKSMKYQGLFLEKESSHLGEFYSKNKANQLTDEEFHLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHHAITGFEANYHLGQARFLEKLHLADGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=33720 SOR_RS04925 WP_000772384.1 983287..986562(-) (rexB) [Streptococcus oralis Uo5]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGAAATCTTGACCAGAGAGGCAGAAGAGCTAGTTGCTGGGGG
CAAGCGGGTCTTCTACATCGCCCCCAACTCTCTTTCATTTGAAAAAGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGTTTTGCTCAGATGGCTCGTTACCTGGTTTTAAATGATTTGCCTGCCAAGACCAGT
CTTGATGATATCGGGCTTGGGATGGCTTTTTATAAATGTCTTGCAGAACTCGATCCTAAAGAATTGCGAGTTTATGGTGC
CATTAAGCAGGAACCTCAATTTATCCAGCAGTTGATTGAACTTTATCATGAGATGACGACTGCTCAGATGAGTTTTTTGG
ACTTGGAAAGTTTAACAGATGAGGATAAGCGAGCGGATTTACTCTTGATTTTTGAGAAAGTGACTGCCTATCTCAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGTTGGCCCATTTGATTGAGGCTATTGAAAATGGCAAGGTAAGTAGTGATTTTAGTCA
GCTTGCTCTGGTCATTGGCGGTTTTACCCGTTTTTCCGCCGAAGAAGAGCGTGTAGTGGATCTGCTCCATCGAAAAGGTG
TCGAGATTGTCATTGGTTCTTATGCAAGTAAGAAGGCCTATACCAGTCCTTTCGCTGAAGGGAATCTCTACCAAGCCAGT
GTAGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACTCATGAGAAGATAGATAG
TTTTGACAAAGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAGCTGACTTTGGAGATCGATGAGAAGGACCGAA
AAAACCTGCAAATCTGGTCTTGTTTGACACAAAAGGAAGAGTTGGAATTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GACCATCCAGAACTGAGTTACAAGCATTTTCGCATTCTCTTAGGGGATGTGGCTTCTTACCAGTTATCACTGAAAACCAT
TTTTGACCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGGCTCACCACCCTTTGACTCAGTATGTCGAAT
CTATTTTGCGTTTAAAACGCTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTATATACTGACCTT
AGCCAAGCGGATATTGATGCTTTTGAGCAATATCTCCGCTATCTTGGTATCAATGGCTTGCCAGCTTTTCAGCAGACCTT
CACAAAATCTCACCACGGAAAATTTGATTTAGAGCGTTTAAATGCTCTTCGTCTGCGAGTTTTGGAGCCACTTGAAACCA
TATTTGCCAGTCGAAAACAAAAGGCTGAAAATCTCTTGCAAAAGTGGAGTATTTTTCTAAAAAATACTGCTTTAAGCAAG
CAAATGCAAGACTTGACAGCTACTATGGAAGCTCTAGAACAGGAAAGACAAGCTGAAGTTTGGAAAGCCTTCTGCCATGT
TTTAGAACAATTTGCGACGGTTTTTGCTGGTTCACAAGTTAGTCTGGAGGACTTCCTGGCCTTGCTTCATTCTGGGATGA
GCCTTTCTCAGTACCGTACTATTCCAGCAACAGTGGACACAGTTCTGGTGCAGAGTTATGATCTGATTGCCCCTCTGACC
GCTGACTTTGTCTACGCTATTGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGTCTTTTGACAGACGA
AGAAAGACAAAATCTAAACCAAGCGACTGAAGAGGGAGCGCAATTACTGATTGCAAGTAGCGAAAATCTCAAGAAAAATC
GCTATACCATGCTTTCTTTAGTCAATGCTGCTCGTAAGCAGTTGGTGTTATCCGCTCCAAGTCTTCTCAATGAAAACGAA
AGCAAGGAATCTGCTTATCTTCATGAACTGGTGAGTTTTGGATTTAGAAGAAGAGAAAAGACAATGAACCATAAAAATCT
TAGCAAAAAAGATATGGGTTCATATCACAGTCTCTTGTCTAGTCTGGTTGCCTACCATCAGCAGAGCGAGACGAATGATA
CTGAGCAAGATTTGACCTTTGTTAAGGTTCTGGCGCGTGTGATGGGTAAAAAACTAGATCAAAAAGGCCTTACAAATCCA
GCACTCCCAACTAGCCCAAGCAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCCGCTGACAAAGAGTTTTA
CCTGTCTACGTCTGGTTTGACTGAGTTTTACCGCAATGAATACAGTTATTTTCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGGCTTCGTCCAGATGCTCGCAGTCACGGGAATTTCTTGCACCGCATTTTTGAGCATGCCTTGAAACTACCTGCT
GAAAATCCATTTGACCAGCGTTTGGAGCAAGCTATTAAGGAAACCAGTCAAGAACGGGAATTTGAAGCCATTTATCAGGA
AAGTTTGGAAGCTCAGTTTACCAAGGAAGTTCTGGTTGATGTCGCGCGGACAACTGGTCATATCCTTCGTCATAATCCAG
CCATCGAAACCATCCAAGAGGAAGCAACATTTGGTGGCAAGGATCAAGCCTTTATTCAATTGGATAATGGTCGCAGTGTC
CATGTGCGTGGCAAGGTTGACCGAATCGACCGTTTGAAAGCTGATGGAGCACTGGGAGTGGTAGACTACAAGTCTAGTTT
AACTCAGTTCCAGTTTTCGAATTTCTTTAATGGCCTCAATTCCCAACTGCCAACCTATCTTGCTGCCCTTAAGGGAGAAG
GAGAGCAAAACTTTTTCGGTGCTATGTACCTAGAAATGGCTGAACCTGTCCAATCTCTGTTGAACGTTAAGAGTTTGGCT
GGAGCAGTAGCAGAAGCCAGCAAGTCAATGAAATACCAAGGGCTCTTTTTAGAAAAAGAAAGCAGTCATTTGGGTGAGTT
TTACAGTAAAAATAAAGCCAACCAGCTGACTGATGAGGAGTTTCATCTCTTGCTAGACTACAATGCACATCTTTATAAGA
AAGCAGCAGAGAAGATTTTAGAAGGACAGTTCGCCATCAATCCATACACAGAGAACGGCAGAAGTATTGCCCCATACGTC
CAGCAACATCATGCAATTACAGGATTTGAAGCCAATTACCATTTGGGTCAAGCACGTTTCCTAGAAAAGTTACACCTAGC
GGATGGCAAACGACTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAGAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.009

100

0.9

Multiple sequence alignment