Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SOR_RS04920 Genome accession   NC_015291
Coordinates   979637..983290 (-) Length   1217 a.a.
NCBI ID   WP_000802714.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 974637..988290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS04895 (SOR_1002) - 976019..976798 (-) 780 WP_000207514.1 ribonuclease HII -
  SOR_RS04900 (SOR_1003) ylqF 976785..977636 (-) 852 WP_000201305.1 ribosome biogenesis GTPase YlqF -
  SOR_RS04905 (SOR_1004) mazE 977852..978067 (+) 216 WP_001098942.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  SOR_RS04910 (SOR_1005) - 978051..978407 (+) 357 WP_000560808.1 type II toxin-antitoxin system PemK/MazF family toxin -
  SOR_RS04915 (SOR_1006) - 978441..979619 (-) 1179 WP_001130898.1 hypothetical protein -
  SOR_RS04920 (SOR_1007) rexA 979637..983290 (-) 3654 WP_000802714.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SOR_RS04925 (SOR_1008) rexB 983287..986562 (-) 3276 WP_000772384.1 ATP-dependent nuclease subunit B Machinery gene
  SOR_RS04930 (SOR_1009) - 986669..987088 (-) 420 WP_001138488.1 EVE domain-containing protein -
  SOR_RS04935 (SOR_1010) - 987081..987542 (-) 462 WP_001136805.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140340.98 Da        Isoelectric Point: 5.1220

>NTDB_id=33719 SOR_RS04920 WP_000802714.1 979637..983290(-) (rexA) [Streptococcus oralis Uo5]
MKPISFFTEEEIQKLQEAEASSSKEQKKTAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISQQIQESNDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLLLK
NEVFHQVFEAHYQGENKENFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPQKWLSNSFLKGFETADFVIEKDKLTE
QIKQALWDLESFFRYHLDNDANEFPKAAYLENVQLVLDEIGSLNQESDSQAYQAVLARIIAISKEKNGRSLANSSRKADL
KPLADAYNDERKAQFAKLGQLADQITILDYQERYHEDTWELAKTFQTFMSDFVEAYRECKRQENAFEFADISHFTIEILE
NFPQVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPKEGKLIL
LKENFRSSSEVLSATNDIFARLMDQEAGEINYDSMHQLVFANTKLTPNPDNKAEFLLYDKGDSGQEEEESQTETKLTGEM
RLVIKEILKLHQEKGVTFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFSFDEDELARLSLQKVEDKVQENLYEKLVNAQKLVTNQKELIHTALAEKLNQFMDILDSWRLYTKTHSLYDLI
WKIYIDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHK
SKGLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEEELQLASYSEQ
MRLLYVAMTRAERKLYLVGKCSREKLEAKEYPTAENGKLDKHTRLQAKNFQDWIWAISKVFARDNLNFSYRFVGEDQLTR
EAIGQLENKSSLQDRSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQSQSV
DKKISFDLPDFSTKERVTGAVIGSATHELMQRIDLSQQPTLATLTETLKQVQTSPAVRKKINLSKVLAFFDTPLGQEILA
NTDYLYREQPFSMLKWDQKSQGDFVVRGILDGYLLYDDRIVLFDYKTDRYDEPSQLIERYRGQLALYGEALSRAYSIENI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=33719 SOR_RS04920 WP_000802714.1 979637..983290(-) (rexA) [Streptococcus oralis Uo5]
ATGAAGCCCATTTCCTTTTTTACTGAGGAAGAAATTCAAAAACTGCAAGAAGCAGAAGCGAGTTCGAGCAAGGAACAGAA
GAAAACAGCCGAGCAAATCGAAGCCATATATACTGCAGGGCAAAATATTCTGGTCTCAGCGTCTGCTGGTTCAGGGAAAA
CCTTTGTCATGGCAGAACGTATTTTGGATCAATTAGCGCGTGGTGTCGAAATTTCTCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACTGAACTTAAGGAACGTTTGGAGAAAAAAATTAGCCAACAAATCCAAGAAAGTAACGATGTTGATCT
CAAACAACACTTGGGACGTCAGTTGGCAGACCTGCCAAACGCTGCCATCGGAACCATGGACTCTTTCACACAAAAATTCC
TTGGCAAACATGGCTATCTGATTGATATCGCACCGAATTTCCGTATTCTACAAAATGAAAGTGAACAGTTACTCTTAAAA
AACGAAGTTTTTCATCAGGTTTTTGAAGCCCATTACCAAGGTGAAAATAAAGAAAACTTTAGTCGCTTGGTCAAGAACTT
TGCTGGACGAGGTAAGGATGAACGAGGTCTGCGCCAGCAAGTCTACAAAATCTATGATTTTCTTCAATCCACCAGCAGTC
CACAAAAATGGTTGAGTAACTCTTTCCTCAAAGGATTTGAAACAGCTGACTTTGTAATTGAAAAAGACAAACTAACTGAG
CAAATAAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTCCGTTATCATCTGGATAACGATGCCAATGAGTTTCCAAAAGC
TGCCTATTTAGAAAATGTGCAGCTGGTTCTGGATGAAATTGGCTCCTTAAATCAAGAGTCCGATAGCCAGGCTTATCAAG
CTGTGCTTGCGCGTATTATCGCCATCTCTAAGGAGAAAAATGGTCGATCTCTAGCTAACTCCAGTCGTAAGGCCGATTTG
AAGCCACTGGCTGATGCCTATAACGATGAGAGAAAGGCCCAGTTTGCTAAACTAGGACAACTGGCGGACCAGATAACCAT
TCTCGACTATCAAGAACGTTATCATGAAGATACTTGGGAGCTAGCTAAAACCTTCCAAACCTTTATGAGTGATTTTGTGG
AGGCTTATCGTGAATGTAAACGCCAAGAAAATGCCTTTGAATTCGCTGATATCAGTCATTTCACCATTGAAATTTTAGAG
AATTTCCCACAAGTCCGCGAGGCTTATCAGGAGAGATTCCACGAAGTCATGGTTGATGAGTATCAGGATACCAACCACAT
TCAAGAACGAATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCCATCTACCGTT
TCCGTCAGGCAGATCCCCAAATTTTCAATGAAAAATTTCAACGCTATGCGCAAAATCCTAAAGAGGGTAAGTTGATACTC
CTCAAGGAAAATTTCCGTAGCAGTTCAGAAGTGCTGTCAGCAACCAATGATATTTTTGCACGCCTTATGGACCAAGAGGC
CGGCGAAATCAACTATGACAGTATGCACCAGCTTGTTTTTGCCAATACCAAACTGACTCCCAATCCAGACAACAAGGCAG
AATTTCTCCTCTACGATAAGGGAGACAGCGGGCAAGAGGAGGAAGAGAGCCAAACAGAAACGAAACTCACTGGGGAAATG
CGTCTGGTCATCAAGGAAATCCTGAAGCTTCATCAGGAAAAAGGCGTTACCTTTAAAGAAATAGCCCTTTTGACTTCCAG
TCGCAGTCGAAATGACCAGATTCTACTTGCCCTGTCTGAGTACGGAATTCCAGTTAAAACCGACGGTGAGCAAAACAATT
ACCTCCAATCCCTAGAAGTACAAGTTATGCTGGACACACTGCGTGTCATTCACAATCCCCTGCAAGACTATGCCTTGGTT
GCTCTGATGAAGTCTCCTATGTTTAGTTTTGACGAGGACGAGTTGGCACGCTTGTCCCTTCAGAAAGTAGAAGATAAGGT
CCAAGAAAATCTCTATGAGAAACTGGTCAATGCTCAAAAACTGGTAACAAACCAGAAAGAGTTAATTCATACAGCTCTAG
CTGAAAAACTAAATCAATTCATGGATATTTTGGATTCTTGGCGCTTATATACCAAAACTCACTCTCTCTATGACTTGATT
TGGAAGATTTACATCGACCGTTTTTATTATGACTATGTTGGGGCTTTGCCGAACGGACCTGCTAGACAGGCCAATCTCTA
TGCCCTAGCGCTACGTGCTGACCAGTTTGAAAAGAGTAATTTCAAGGGCTTGTCGCGTTTTATACGTATGATTGACCAAG
TCCTAGAAGCCCAGCACGATCTCGCAAGCGTAGCCGTCGCACCGCCTAAAGATGCCGTGGAACTTATGACCATTCACAAG
AGCAAAGGATTGGAATTTCCTTACGTCTTTATCCTCAACATGGATCAGGACTTCAACAAGCAAGACTCGATGTCAGAAGT
TATTCTCAGTCGTAAAAATGGGCTTGGTGTCAAATACATTGCCAAGGTAGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCCATTCCTAGCCTAACTTATACGCAGAATGAAGAAGAGCTGCAATTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACACGGGCTGAGAGAAAGCTTTATCTTGTCGGTAAGTGCTCTCGTGAAAAACTGGA
AGCCAAGGAATATCCAACAGCTGAAAACGGAAAACTAGATAAACATACCAGACTTCAAGCTAAGAATTTCCAAGATTGGA
TATGGGCGATTAGTAAAGTATTTGCTAGAGACAATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGACCAGTTGACTAGA
GAAGCTATTGGTCAGTTGGAAAACAAGAGTTCTCTACAAGATAGATCTCAAGCAGACAATCGCCAGTCAGAAACCATTAA
AGAAGCTTTGGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGTGCAGCCATTGAGCTACCTAGTGTTCAAA
CCCCAAGCCAAATCAAGAAATTCTACGAACCTGTTATGGATATGGAAGGTGTTGAGATTGCAGGTCAAAGTCAGTCAGTA
GACAAGAAAATCAGCTTTGATTTACCAGATTTTTCAACTAAAGAAAGGGTGACAGGAGCTGTGATTGGTAGTGCAACCCA
CGAACTGATGCAGAGAATTGACCTTAGTCAGCAACCAACACTTGCCACTCTGACAGAAACTCTCAAACAAGTTCAGACTA
GTCCAGCTGTTAGAAAAAAGATCAATCTTTCTAAAGTCCTAGCTTTCTTTGACACACCACTTGGTCAGGAGATTCTCGCT
AATACTGACTATCTCTATCGTGAGCAACCTTTTTCCATGCTCAAATGGGACCAAAAGAGTCAGGGAGACTTTGTTGTTCG
TGGAATCTTGGATGGCTATCTGCTTTATGATGATAGAATCGTTCTTTTCGACTATAAGACAGACCGCTATGATGAGCCAA
GTCAACTCATTGAACGCTATCGTGGGCAGTTAGCGCTCTACGGAGAAGCTTTATCACGAGCCTATTCGATTGAAAATATT
GAAAAATACTTGATCTTACTTGGCAAAGACGAGGTTCAGGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

90.633

100

0.906

Multiple sequence alignment