Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EQH38_RS09225 Genome accession   NZ_CP035242
Coordinates   1797096..1797827 (-) Length   243 a.a.
NCBI ID   WP_000889921.1    Uniprot ID   A0AAI8ZWM3
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1792096..1802827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS09195 (EQH38_09695) blpC 1792644..1792772 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  EQH38_RS09200 (EQH38_09700) - 1792843..1794183 (-) 1341 WP_001017646.1 sensor histidine kinase -
  EQH38_RS09205 (EQH38_09705) comE/blpR 1794197..1794934 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  EQH38_RS09210 (EQH38_09710) - 1794939..1795277 (-) 339 WP_000682120.1 LytTR family DNA-binding domain-containing protein -
  EQH38_RS09215 (EQH38_09715) - 1795553..1795882 (+) 330 WP_000132567.1 hypothetical protein -
  EQH38_RS09220 (EQH38_09725) - 1796050..1797099 (-) 1050 WP_000653773.1 ABC transporter permease -
  EQH38_RS09225 (EQH38_09730) pptA 1797096..1797827 (-) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  EQH38_RS09230 (EQH38_09735) - 1797895..1798305 (+) 411 WP_001278301.1 HIT family protein -
  EQH38_RS09235 (EQH38_09740) - 1798315..1798602 (+) 288 WP_000777753.1 hypothetical protein -
  EQH38_RS09240 (EQH38_09745) - 1798764..1798958 (+) 195 WP_001808905.1 hypothetical protein -
  EQH38_RS09245 (EQH38_09750) dnaJ 1799292..1800428 (-) 1137 WP_001066295.1 molecular chaperone DnaJ -
  EQH38_RS09250 (EQH38_09755) - 1800830..1801186 (-) 357 WP_054366142.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26998.46 Da        Isoelectric Point: 4.7792

>NTDB_id=337161 EQH38_RS09225 WP_000889921.1 1797096..1797827(-) (pptA) [Streptococcus pneumoniae strain TVO_1901947]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVADPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=337161 EQH38_RS09225 WP_000889921.1 1797096..1797827(-) (pptA) [Streptococcus pneumoniae strain TVO_1901947]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGCGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment