Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EQH38_RS07115 Genome accession   NZ_CP035242
Coordinates   1375910..1377712 (-) Length   600 a.a.
NCBI ID   WP_061367457.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1370910..1382712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS07080 (EQH38_07465) - 1371023..1371865 (+) 843 WP_000954122.1 DUF368 domain-containing protein -
  EQH38_RS07085 (EQH38_07470) - 1371865..1372347 (+) 483 WP_001085886.1 aminoacyl-tRNA deacylase -
  EQH38_RS07090 (EQH38_07475) - 1372347..1372967 (+) 621 WP_000780813.1 histidine phosphatase family protein -
  EQH38_RS07095 (EQH38_07480) - 1373220..1373315 (-) 96 Protein_1381 IS630 family transposase -
  EQH38_RS07100 (EQH38_07490) - 1373729..1374070 (+) 342 Protein_1382 IS3 family transposase -
  EQH38_RS07105 (EQH38_07495) prsA 1374187..1375128 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  EQH38_RS07110 (EQH38_07500) - 1375195..1375908 (-) 714 WP_077141330.1 O-methyltransferase -
  EQH38_RS07115 (EQH38_07505) pepF 1375910..1377712 (-) 1803 WP_061367457.1 oligoendopeptidase F Regulator
  EQH38_RS07120 (EQH38_07510) coiA 1377731..1378684 (-) 954 WP_000495909.1 competence protein CoiA Machinery gene
  EQH38_RS07125 (EQH38_07515) tehB 1378757..1379617 (-) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  EQH38_RS07130 (EQH38_07520) smpB 1379633..1380100 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  EQH38_RS07135 (EQH38_07525) rnr 1380063..1382417 (-) 2355 WP_000654872.1 ribonuclease R -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69891.82 Da        Isoelectric Point: 4.5469

>NTDB_id=337148 EQH38_RS07115 WP_061367457.1 1375910..1377712(-) (pepF) [Streptococcus pneumoniae strain TVO_1901947]
MVLQRNEINEKDTWDISTIYPTDQAWEEALKDLTEQLETVAQYEGHLLDSADNLLEITEFSLEMERQIEKLYVYAHMKND
QDTREAKYQEYYAKVMTLYSQLDQAFSFYEPEFMEISEKQYADFLEAQPKLQVYQHYFDKLLQGKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKKREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=337148 EQH38_RS07115 WP_061367457.1 1375910..1377712(-) (pepF) [Streptococcus pneumoniae strain TVO_1901947]
ATGGTATTACAAAGAAATGAAATAAATGAAAAAGATACATGGGATATATCAACGATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAATTGGAGACAGTAGCCCAGTATGAAGGCCATCTCTTGGATAGTGCGGATAACC
TACTAGAAATCACTGAATTTTCTCTTGAAATGGAACGCCAGATAGAGAAGCTTTACGTTTATGCTCATATGAAGAATGAC
CAGGATACACGTGAAGCTAAGTATCAAGAGTACTATGCCAAGGTCATGACACTCTACAGCCAGTTAGACCAAGCCTTTTC
ATTCTATGAGCCTGAATTTATGGAGATTAGCGAAAAGCAGTATGCTGACTTTTTAGAAGCTCAACCAAAGCTGCAGGTTT
ATCAACACTATTTTGACAAGCTCTTGCAAGGCAAGGATCACGTTCTTTCACAACGTGAAGAAGAATTATTGGCTGGAGCT
GGAGAAATCTTTGGTTCAGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTGTTCCCTTATGTCCTAGACGA
TGATGGTAAAGAAGTTCAGCTATCTCATGGGACTTACACACGTTTGATGGAGTCTAAAAAACGTGAGGTTCGCCGTGGTG
CCTATCAAGCTCTTTATGCGACTTACGAACAATTCCAACACACCTATGCCAAAACCTTGCAAACCAATGTTAAGGTGCAA
AATTACCGTGCTAAAGTTCGTAACTACAAGAGTGCTCGTCATGCAGCCCTCGCAGCGAATTTTGTTCCAGAAAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTACATCGCTATCTTGAGCTTCGTTCAAAAATCTTGGGGA
TTTCAGATCTCAAGATGTACGATGTCTACACACCGCTTTCATCTGTTGAATACAGTTTTACCTACCAAGAAGCCTTGAAA
AAAGCAGAAGATGCTTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAATCAAGGCAAGCGTTCAGGTGCCTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTGGACAATCTCTTTACTCTTGTTCATGAAACAGGTCACAGTATGCATTCAAGCTATACTCGTGAAACT
CAGCCTTATGTTTACGGAGATTACTCTATCTTTTTGGCTGAGATTGCCTCAACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGACGACGCAACACGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAACACGCCATTCACCAAGCAGATCAAAATGGGGAGGTCTTGACAAGCGATTTC
CTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCTCGCATTCCACACTTCTACTATAACTACTATGTATATCAATATTCAACTGGCTTTGCGGCCGCCTCAGCCTTGGCTG
AAAAAATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAGTCGGACTATCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTACCTCAACGATGCCTTTGCAGTCTTTGAACGCCGTTT
AAATGAGTTTGAAGCCCTTGTTGAAAAATTAGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.114

99.333

0.667

Multiple sequence alignment