Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EQH38_RS04510 Genome accession   NZ_CP035242
Coordinates   834050..835282 (+) Length   410 a.a.
NCBI ID   WP_000106346.1    Uniprot ID   A0A064C077
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 829050..840282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS04480 (EQH38_04750) - 829122..829799 (+) 678 WP_000221614.1 DnaD domain-containing protein -
  EQH38_RS04485 (EQH38_04755) tpiA 829897..830655 (+) 759 WP_000087897.1 triose-phosphate isomerase -
  EQH38_RS04490 (EQH38_04760) lytC 830693..832198 (+) 1506 WP_012386833.1 choline binding-anchored murein hydrolase LytC -
  EQH38_RS04495 (EQH38_04765) - 832694..833212 (+) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  EQH38_RS04500 (EQH38_04770) - 833342..833848 (+) 507 WP_000162486.1 dihydrofolate reductase -
  EQH38_RS04505 (EQH38_04775) - 833848..834018 (+) 171 WP_000442275.1 hypothetical protein -
  EQH38_RS04510 (EQH38_04780) clpX 834050..835282 (+) 1233 WP_000106346.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EQH38_RS04515 (EQH38_04785) yihA 835291..835878 (+) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EQH38_RS04520 (EQH38_04790) - 835889..836269 (+) 381 WP_001140412.1 RidA family protein -
  EQH38_RS04525 (EQH38_04795) rapZ 836321..837211 (+) 891 WP_000163035.1 RNase adapter RapZ -
  EQH38_RS04530 (EQH38_04800) - 837208..838185 (+) 978 WP_001231087.1 YvcK family protein -
  EQH38_RS04535 (EQH38_04805) whiA 838182..839093 (+) 912 WP_000011306.1 DNA-binding protein WhiA -
  EQH38_RS04540 (EQH38_04810) - 839127..840095 (-) 969 WP_000080996.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 4.4550

>NTDB_id=337139 EQH38_RS04510 WP_000106346.1 834050..835282(+) (clpX) [Streptococcus pneumoniae strain TVO_1901947]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=337139 EQH38_RS04510 WP_000106346.1 834050..835282(+) (clpX) [Streptococcus pneumoniae strain TVO_1901947]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAGGCGATTGACGAAAACAGCTCATATATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACTTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C077

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment