Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EQH39_RS06830 Genome accession   NZ_CP035241
Coordinates   1369285..1370517 (-) Length   410 a.a.
NCBI ID   WP_000106343.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901948     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364285..1375517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH39_RS06800 (EQH39_07175) - 1364475..1365440 (+) 966 WP_000081010.1 NAD(P)/FAD-dependent oxidoreductase -
  EQH39_RS06805 (EQH39_07180) whiA 1365474..1366385 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  EQH39_RS06810 (EQH39_07185) - 1366382..1367359 (-) 978 WP_001231085.1 YvcK family protein -
  EQH39_RS06815 (EQH39_07190) rapZ 1367356..1368246 (-) 891 WP_000163035.1 RNase adapter RapZ -
  EQH39_RS06820 (EQH39_07195) - 1368298..1368678 (-) 381 WP_001140412.1 RidA family protein -
  EQH39_RS06825 (EQH39_07200) yihA 1368689..1369276 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EQH39_RS06830 (EQH39_07205) clpX 1369285..1370517 (-) 1233 WP_000106343.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EQH39_RS06835 (EQH39_07210) - 1370549..1370719 (-) 171 WP_000442275.1 hypothetical protein -
  EQH39_RS06840 (EQH39_07215) - 1370719..1371225 (-) 507 WP_000162452.1 dihydrofolate reductase -
  EQH39_RS06845 (EQH39_07220) - 1371355..1371873 (-) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  EQH39_RS06850 (EQH39_07225) lytC 1372369..1373874 (-) 1506 WP_078152441.1 choline binding-anchored murein hydrolase LytC -
  EQH39_RS06855 (EQH39_07230) tpiA 1373912..1374670 (-) 759 WP_000087905.1 triose-phosphate isomerase -
  EQH39_RS06860 (EQH39_07235) - 1374768..1375445 (-) 678 WP_000221604.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45825.38 Da        Isoelectric Point: 4.4550

>NTDB_id=337056 EQH39_RS06830 WP_000106343.1 1369285..1370517(-) (clpX) [Streptococcus pneumoniae strain TVO_1901948]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=337056 EQH39_RS06830 WP_000106343.1 1369285..1370517(-) (clpX) [Streptococcus pneumoniae strain TVO_1901948]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATACTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAATGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.965

98.049

0.559

Multiple sequence alignment