Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SOR_RS02740 Genome accession   NC_015291
Coordinates   521873..522469 (+) Length   198 a.a.
NCBI ID   WP_000966736.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 516873..527469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS02725 (SOR_0559) - 517810..518574 (+) 765 WP_001067286.1 class I SAM-dependent methyltransferase -
  SOR_RS02730 (SOR_0560) - 518710..519561 (-) 852 WP_001039481.1 MurR/RpiR family transcriptional regulator -
  SOR_RS02735 (SOR_0561) pbp2b 519817..521862 (+) 2046 WP_001224842.1 penicillin-binding protein PBP2B -
  SOR_RS02740 (SOR_0562) recR 521873..522469 (+) 597 WP_000966736.1 recombination mediator RecR Machinery gene
  SOR_RS02745 (SOR_0563) - 522774..523049 (+) 276 WP_000509003.1 hypothetical protein -
  SOR_RS02750 (SOR_0564) - 523052..523408 (+) 357 WP_000764042.1 hypothetical protein -
  SOR_RS02755 (SOR_0565) - 523399..525000 (+) 1602 WP_000538404.1 virulence protein -
  SOR_RS02760 (SOR_0566) - 525010..525639 (+) 630 WP_001242075.1 hypothetical protein -
  SOR_RS02765 (SOR_0567) - 525636..526262 (+) 627 WP_000780965.1 hypothetical protein -
  SOR_RS02770 (SOR_0568) - 526259..526888 (+) 630 WP_001242116.1 hypothetical protein -
  SOR_RS02775 (SOR_0569) - 526929..527462 (+) 534 WP_001281101.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21698.85 Da        Isoelectric Point: 4.4927

>NTDB_id=33699 SOR_RS02740 WP_000966736.1 521873..522469(+) (recR) [Streptococcus oralis Uo5]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMPDDDVNEFAKNLLAAKRELTYCSICGRLTDDDPCSICTDPSRDQS
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYISRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=33699 SOR_RS02740 WP_000966736.1 521873..522469(+) (recR) [Streptococcus oralis Uo5]
ATGCTTTACCCAACACCTATAGCTAAGCTGATTGACAGTTATTCTAAACTTCCGGGTATCGGGATTAAGACAGCAACCCG
GCTGGCCTTTTATACTATTGGAATGCCGGATGATGACGTCAACGAATTTGCTAAAAATCTTCTGGCAGCTAAACGAGAAT
TGACCTATTGTTCAATCTGCGGACGTTTGACGGATGATGATCCTTGTTCCATCTGTACCGATCCTAGTCGAGATCAGTCA
ACGATTCTGGTTCTGGAGGATAGCCGCGATGTCGCTGCTATGGAAAATATCCAAGAATACCACGGACTATATCATGTCTT
GCACGGTTTGATTTCCCCTATGAATGGGATTAGCCCAGATGACATCAATCTCAAGAGTCTCATGACGCGTCTTATGGATA
GCGAGGTTTCAGAGGTCATCGTCGCGACCAATGCCACTGCTGATGGTGAGGCGACCTCCATGTATATCTCTCGGTTACTC
AAACCTGCAGGGATTAAAGTCACTCGTCTAGCAAGAGGTCTAGCAGTCGGAGCTGATATCGAATATGCGGACGAAGTAAC
GCTCCTAAGAGCTATTGAAAATCGGACAGAGTTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

96.97

100

0.97
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment