Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SOR_RS01850 Genome accession   NC_015291
Coordinates   370282..371331 (+) Length   349 a.a.
NCBI ID   WP_000653788.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 365282..376331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS01825 (SOR_0371) dnaJ 366850..367986 (+) 1137 WP_001066315.1 molecular chaperone DnaJ -
  SOR_RS01830 (SOR_0372) - 368065..368718 (-) 654 WP_000808554.1 hypothetical protein -
  SOR_RS01835 (SOR_0373) - 368788..369066 (-) 279 WP_000777740.1 hypothetical protein -
  SOR_RS01840 (SOR_0374) - 369076..369486 (-) 411 WP_001278310.1 HIT family protein -
  SOR_RS01845 (SOR_0375) pptA 369554..370285 (+) 732 WP_000889946.1 ABC transporter ATP-binding protein Regulator
  SOR_RS01850 (SOR_0376) pptB 370282..371331 (+) 1050 WP_000653788.1 ABC transporter permease Regulator
  SOR_RS01855 (SOR_0377) ccrZ 371379..372173 (+) 795 WP_000363021.1 cell cycle regulator CcrZ -
  SOR_RS01860 (SOR_0378) trmB 372170..372805 (+) 636 WP_001266088.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SOR_RS01865 (SOR_0379) rimP 372932..373411 (+) 480 WP_041170805.1 ribosome maturation factor RimP -
  SOR_RS01870 (SOR_0380) nusA 373454..374590 (+) 1137 WP_000032280.1 transcription termination factor NusA -
  SOR_RS01875 (SOR_0381) rnpM 374612..374905 (+) 294 WP_000857560.1 RNase P modulator RnpM -
  SOR_RS01880 (SOR_0382) - 374898..375197 (+) 300 WP_001041396.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40416.43 Da        Isoelectric Point: 10.0006

>NTDB_id=33694 SOR_RS01850 WP_000653788.1 370282..371331(+) (pptB) [Streptococcus oralis Uo5]
MKDLFLKRKQAFRKECVGYLRYVLNDHFVLFLLVLIGFLAYQYSQLLQHFPENHWPILLFLGIVSALLLAWGGIATYMEG
PDKLFLLVSEEEVKSHLKGQTMRSLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLIYVLLLGAGKYLLFRQKSSKFFTETG
LDWDYVVSQESKRKQVLLRFFALFTQVKGVSNSVKRRAYLDFILRTVQKVPSKIWQNLYLRSYLRNGDLFALSLRLLFLS
LLALLFIEQAWIATAVVVLFNYLLLFQLLALYRAFDYQYLTQLFPLEKGEKEKGLKQIVLGVGSVVLLLELLVGAVVFQE
KIALLALVGASLVLQLFYLPYQVKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=33694 SOR_RS01850 WP_000653788.1 370282..371331(+) (pptB) [Streptococcus oralis Uo5]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTGTCGGTTATCTGCGTTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTAGTTCTCATCGGTTTTCTAGCTTACCAGTACAGTCAACTCCTGCAACATTTTCCTGAAAACC
ACTGGCCTATCCTCTTGTTTTTGGGGATTGTATCTGCCTTGCTTTTGGCTTGGGGAGGAATCGCGACCTACATGGAAGGG
CCTGACAAGCTCTTTCTCTTAGTCAGTGAAGAGGAAGTTAAGTCTCACCTCAAAGGGCAGACGATGCGCTCACTGGTCTT
TTGGCTCTTTGTCCAAACCCTTTTCTTGCTTTTATTTGCGCCCTTATTTTTAGCCATGGGTTATGGCTTGCCAGTCTTTC
TCATCTATGTGCTTTTGTTGGGAGCTGGGAAATATCTCCTCTTTCGCCAAAAATCCAGTAAATTTTTTACAGAGACTGGG
CTTGACTGGGACTATGTCGTTTCCCAAGAAAGCAAGCGCAAGCAAGTCTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
TAAGGGCGTTTCAAATAGTGTCAAACGTCGCGCTTATCTGGATTTCATCCTTAGAACAGTTCAGAAAGTGCCGAGCAAGA
TTTGGCAAAACCTCTATCTCCGTTCTTACTTGCGAAATGGAGACCTCTTTGCCCTCAGTCTCCGTCTCCTCTTCCTATCC
TTGTTAGCTTTGCTCTTTATCGAGCAAGCTTGGATCGCGACAGCAGTAGTAGTTTTATTTAACTATCTCCTGCTCTTTCA
GTTACTGGCTCTCTATCGTGCCTTTGACTACCAGTACTTGACCCAGCTCTTTCCTTTAGAAAAGGGTGAAAAAGAGAAGG
GTTTGAAACAGATAGTGCTCGGTGTTGGAAGTGTCGTTCTTTTGTTGGAATTGCTAGTCGGAGCAGTAGTTTTTCAAGAA
AAAATAGCCTTGTTGGCTCTTGTAGGAGCAAGTCTTGTCCTACAATTGTTTTATTTACCTTACCAAGTGAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.143

100

0.473

  pptB Streptococcus thermophilus LMD-9

46

100

0.461


Multiple sequence alignment