Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   FY406_RS10275 Genome accession   NZ_CP043405
Coordinates   2074111..2077356 (-) Length   1081 a.a.
NCBI ID   WP_003088881.1    Uniprot ID   A0ABP2QYT4
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2069111..2082356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS10260 (FY406_10260) - 2070105..2070245 (-) 141 Protein_1973 UDP-glucose 4-epimerase -
  FY406_RS10560 - 2070250..2070427 (-) 178 Protein_1974 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  FY406_RS10270 (FY406_10270) rexA 2070489..2074121 (-) 3633 WP_003088880.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FY406_RS10275 (FY406_10275) rexB 2074111..2077356 (-) 3246 WP_003088881.1 ATP-dependent nuclease subunit B Machinery gene
  FY406_RS10280 (FY406_10280) - 2077946..2078218 (+) 273 WP_003088883.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  FY406_RS10285 (FY406_10285) - 2078219..2078497 (+) 279 WP_003088886.1 type II toxin-antitoxin system YafQ family toxin -
  FY406_RS10290 (FY406_10290) - 2078592..2080955 (-) 2364 WP_003088889.1 PBECR4 domain-containing protein -

Sequence

Protein


Download         Length: 1081 a.a.        Molecular weight: 124333.18 Da        Isoelectric Point: 5.2567

>NTDB_id=336897 FY406_RS10275 WP_003088881.1 2074111..2077356(-) (rexB) [Streptococcus ratti strain ATCC 31377]
MKLLYTDIQYDMTEILAAEARQAAKESKRVFYLAPNSLSFEKERAVLEALPEEASFAITITRFAQMARYFVLNEPYQREV
IDDNGLAMIFYRALAGFSEQDLPVFGRLKQDTNFISQLVDLYKELKASNMTVLELTELNSPEKQEDLIKIFNKAEAILNA
GNFDSQSKTAFFTQQLKAGHLDSELKDLLIIVDGFTRFSAEEENLISLLHEKKVPVIIGTYISQKAYRSAFSKGNVYQAS
LDFMRGLAAKFKTKPEYVRSKQKGLQAFANLSSIFESRHDFSADGRTLTKEDKEHIVIWDAVNQKEEAEHVARAIRRKLY
QGYRYKDILVLLGDTDAYQLQVGKIFDKYEIPYYFGKAESMSSHPLVHFIDSLERIKRYNFRAEDVMNVLKSGLYGRLQQ
EELDKLEYYISYADIKGQSKFFNDFTLDNQGQFDLKQLNQWRSELISPLRQLVKAQKQLGKSLLKKLTVFLEDIALPENF
VLLTAESGEIEQEKHEQVWKTFTAILEQFQRIFGGEKLTLDEFLSLLRASMLAADYRTIPAAVDVVTVKAYDLVEPHTNK
IVFAMGMTQSNFPKIVQNRSLISDEERARINDITPDNRRFDIVSSENLKKNHFAALSLFNAATEELILSLPQILNETEDS
TSSYLLELAEFGVPIVEKGRSGQLSNPEDIGNYKALLSRVIELERASIDQEMTKEEQTFWSVAVRYLRKKLNEQGIVIPE
INDSMQTKPLAPSVIKARFPADEPINLSSSALTAFYNNQYLYFLRYVLGLQELETIHPDAKNHGSYLHRVFELVMQDAAA
PDDFDGRLNQAIAKANEENSFKMLYEEDEESRYSLDVLEDIARSTASILRDDAQIQVESEEEAFELMLGNAVKIRGFIDR
IDRLSDGSLGIIDYKSSRNTFDIQKFYNGLSPQLLTYMEAVNNRSDLPDRQKIFGAMYLHMQEPKLDLSSVKSLDKIPEA
IHKELTYRGLFLDEEKAYLADGKYHLNDSVYSQKEIDLLLAYNRELYQKAARQIRSGHFLINPYSQDGKSVQGEQLKAIT
HFEADRHMPYARKLHQLPRKEKRQGFLHLMQAKQEEENNDF

Nucleotide


Download         Length: 3246 bp        

>NTDB_id=336897 FY406_RS10275 WP_003088881.1 2074111..2077356(-) (rexB) [Streptococcus ratti strain ATCC 31377]
ATGAAACTTTTATACACTGACATTCAATATGATATGACAGAGATTTTGGCTGCTGAGGCTAGACAGGCTGCTAAAGAGAG
CAAGCGTGTTTTTTATCTTGCTCCTAACTCTCTGTCTTTTGAAAAGGAGCGGGCGGTTTTAGAGGCTCTGCCTGAAGAGG
CCTCTTTTGCCATTACCATTACGCGTTTTGCGCAGATGGCCCGCTATTTTGTTTTAAATGAGCCCTATCAAAGAGAAGTT
ATTGATGACAATGGTCTGGCTATGATTTTTTACCGGGCTTTGGCTGGTTTTTCTGAACAGGATTTGCCTGTGTTTGGCCG
TTTGAAACAGGACACGAACTTTATCAGTCAATTGGTCGATTTATATAAAGAGCTTAAGGCTTCCAATATGACGGTTTTAG
AACTGACCGAGCTTAATTCTCCAGAAAAGCAGGAAGATCTGATTAAGATTTTTAACAAGGCTGAGGCGATTTTAAATGCT
GGAAATTTTGATAGTCAAAGTAAAACAGCCTTTTTTACCCAACAGCTTAAGGCAGGACATCTGGACAGTGAACTTAAGGA
CTTGCTGATTATTGTGGATGGTTTTACTCGTTTTTCTGCCGAAGAAGAGAACCTTATCAGTCTCTTGCATGAAAAAAAAG
TGCCCGTTATCATCGGTACTTACATCAGCCAAAAGGCCTACCGTTCAGCATTCTCAAAGGGGAATGTTTATCAGGCCAGT
TTGGATTTTATGCGCGGTCTGGCTGCTAAATTTAAAACAAAACCAGAATATGTAAGGTCCAAGCAAAAGGGACTGCAGGC
TTTTGCAAATCTTTCCAGCATTTTTGAGAGCCGCCATGATTTTTCTGCCGATGGACGGACCCTGACAAAAGAAGATAAAG
AACACATTGTTATCTGGGATGCTGTCAATCAAAAGGAAGAAGCAGAACATGTCGCTAGAGCTATACGCCGAAAGCTTTAT
CAAGGCTATCGTTACAAGGATATTTTAGTTTTGCTGGGAGACACAGATGCTTATCAGCTGCAGGTAGGAAAAATTTTTGA
TAAGTATGAGATTCCTTATTATTTCGGCAAGGCCGAATCGATGAGTTCACATCCTTTGGTGCATTTTATAGACAGTTTAG
AGCGGATCAAGCGTTACAATTTTCGGGCTGAGGATGTTATGAATGTGCTTAAGTCAGGCTTGTATGGCCGCTTGCAGCAA
GAAGAGCTGGATAAATTGGAATACTATATTAGTTATGCAGATATCAAGGGACAAAGCAAGTTTTTCAACGATTTTACTTT
GGACAATCAGGGACAGTTTGATCTGAAACAGTTAAATCAGTGGCGTTCTGAACTTATAAGTCCCTTGCGGCAGCTGGTTA
AGGCACAAAAGCAGCTGGGAAAAAGTCTTCTGAAAAAACTGACTGTTTTTTTAGAGGATATTGCCCTGCCGGAAAATTTT
GTCCTGCTGACAGCAGAAAGCGGGGAAATTGAGCAGGAAAAGCACGAACAAGTCTGGAAGACCTTTACAGCTATTTTAGA
GCAGTTTCAAAGAATCTTCGGCGGGGAAAAGCTGACGCTGGATGAATTTTTGTCTTTGCTCCGCGCCAGCATGCTAGCGG
CTGATTACCGTACGATTCCTGCTGCAGTTGATGTTGTCACGGTTAAAGCCTATGATTTGGTAGAGCCGCACACCAATAAA
ATTGTCTTTGCCATGGGTATGACACAGTCCAATTTTCCTAAGATTGTCCAAAACCGGAGCCTGATTTCGGATGAGGAGCG
AGCACGAATCAATGATATAACACCGGATAATCGCCGGTTTGATATTGTCAGCAGTGAAAATCTCAAAAAAAATCACTTTG
CAGCTTTATCGCTTTTTAATGCTGCGACTGAGGAATTAATTCTCAGCCTGCCGCAAATTTTAAATGAGACAGAAGACAGC
ACTTCCTCTTATTTACTGGAATTAGCTGAGTTTGGTGTGCCGATAGTGGAAAAGGGACGGAGTGGTCAGCTGAGTAATCC
GGAAGACATTGGCAACTATAAAGCGCTCTTGTCGCGCGTGATTGAGCTAGAGCGTGCTTCCATTGATCAAGAAATGACTA
AGGAGGAGCAGACCTTCTGGTCGGTGGCCGTGCGTTATCTGCGCAAGAAACTTAATGAGCAGGGGATTGTCATTCCTGAG
ATTAATGACAGTATGCAGACCAAACCGCTTGCTCCTTCGGTTATAAAGGCCCGCTTTCCGGCAGATGAGCCCATAAATCT
GTCGTCGTCAGCTTTAACAGCTTTTTATAACAATCAGTACCTTTATTTTCTGCGGTATGTCCTTGGTTTGCAGGAATTGG
AGACCATTCATCCGGACGCTAAGAATCACGGAAGCTACCTGCACCGTGTTTTTGAATTGGTGATGCAGGATGCAGCGGCT
CCTGATGATTTTGATGGCAGGTTAAATCAGGCTATAGCAAAGGCCAATGAGGAAAACAGCTTTAAGATGCTTTATGAGGA
AGATGAGGAAAGCCGTTATTCTTTAGATGTTTTAGAAGACATTGCCAGAAGCACAGCCAGTATTTTGCGTGATGATGCTC
AAATTCAGGTGGAAAGCGAAGAAGAGGCCTTTGAGCTCATGCTGGGAAATGCTGTTAAAATCCGTGGTTTTATCGACCGT
ATTGACCGTCTGTCTGATGGCAGCCTAGGAATTATTGACTATAAATCCAGCAGAAATACCTTTGATATTCAGAAATTCTA
CAATGGTCTCAGTCCGCAGCTCCTGACTTATATGGAGGCCGTCAATAACAGAAGTGATTTGCCTGACCGTCAAAAGATTT
TTGGAGCTATGTATCTGCATATGCAAGAGCCAAAATTAGACTTAAGTAGTGTAAAATCCTTGGATAAGATTCCTGAGGCA
ATCCATAAGGAACTGACTTACAGAGGGCTTTTCTTAGATGAAGAAAAAGCTTATCTAGCTGATGGCAAATACCATTTGAA
CGACTCGGTCTATAGTCAAAAAGAGATTGATCTGCTGCTTGCTTATAACCGAGAGCTTTATCAAAAAGCAGCCCGGCAGA
TTCGAAGCGGACATTTTCTGATTAATCCTTATAGTCAGGACGGCAAATCGGTACAAGGTGAGCAGCTCAAAGCTATTACA
CACTTTGAAGCGGACCGTCACATGCCTTATGCCCGCAAGCTTCATCAGCTGCCGCGCAAAGAAAAACGTCAGGGCTTCCT
GCATCTTATGCAGGCCAAGCAGGAGGAGGAAAACAATGACTTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1025)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.937

99.167

0.436

Multiple sequence alignment