Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   FY406_RS10270 Genome accession   NZ_CP043405
Coordinates   2070489..2074121 (-) Length   1210 a.a.
NCBI ID   WP_003088880.1    Uniprot ID   A0ABP2QYN5
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2065489..2079121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS10235 (FY406_10235) lacD 2065834..2066814 (-) 981 WP_003088867.1 tagatose-bisphosphate aldolase -
  FY406_RS10240 (FY406_10240) - 2066817..2067749 (-) 933 WP_003088870.1 tagatose-6-phosphate kinase -
  FY406_RS10245 (FY406_10245) lacB 2067764..2068279 (-) 516 WP_003088875.1 galactose-6-phosphate isomerase subunit LacB -
  FY406_RS10250 (FY406_10250) lacA 2068293..2068718 (-) 426 WP_003088876.1 galactose-6-phosphate isomerase subunit LacA -
  FY406_RS10255 (FY406_10255) - 2068978..2069748 (+) 771 WP_003088877.1 DeoR/GlpR family DNA-binding transcription regulator -
  FY406_RS10260 (FY406_10260) - 2070105..2070245 (-) 141 Protein_1973 UDP-glucose 4-epimerase -
  FY406_RS10560 - 2070250..2070427 (-) 178 Protein_1974 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  FY406_RS10270 (FY406_10270) rexA 2070489..2074121 (-) 3633 WP_003088880.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FY406_RS10275 (FY406_10275) rexB 2074111..2077356 (-) 3246 WP_003088881.1 ATP-dependent nuclease subunit B Machinery gene
  FY406_RS10280 (FY406_10280) - 2077946..2078218 (+) 273 WP_003088883.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  FY406_RS10285 (FY406_10285) - 2078219..2078497 (+) 279 WP_003088886.1 type II toxin-antitoxin system YafQ family toxin -

Sequence

Protein


Download         Length: 1210 a.a.        Molecular weight: 138395.54 Da        Isoelectric Point: 5.0781

>NTDB_id=336896 FY406_RS10270 WP_003088880.1 2070489..2074121(-) (rexA) [Streptococcus ratti strain ATCC 31377]
MTFKNFLSAQEIASLQLEEAESNKQQKRTPEQIEAIYSYGNNILVSASAGSGKTFVMIERIMDKILRGVKIEDLFISTFT
VKAAGELKERLEKKLTQHLQTASDPKLKQFLAEELASVQTADIGTMDAFTQKLVNQYGYTLGISPSFRIMQDKSEQDILK
NDVFADLFADYMRSENRSVFVKLVKNFAGSRKDSDPFKQLVYKIYDFSQATDNPKSWLTDSFLKGAETYTDFSAIPEQEV
AEFLASMEDTAKALRDLTDLEDYKQLTGKGAPTANYKKHLNMIEKLQDWAWNFESLYGREGLGKLANDIADLIPSGDSVT
VAKVKYPVFKALQGRLAELRHLETIFAYQAESLPLLRLLQQFVLDFSEQYLQAKMQENAFEFSDIAHFAIEILEENPDIR
QLYQNKYHEVMVDEYQDNNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNAKFKDFQEHPEHGKLILLKENFR
SQSEVLATANSVFSHLMDEAVGEILYDDSHQLLAGSDRQKEAHPENATQVLLYDTDENEEALSDDDSNQISPSEVKLVAK
EIIRLHNEEKVPFEDITLLVASRTRNDGIIQTFDHYGIPLVTDGGEQNYLKSVEIMVMLDTLRSIDNPLNDYALTALLRS
PMFAFDEDELTRLALQKTSDSHKENLYEKMQNAINKQGQHPELMTPDLAAKLQAFLDVFGSWRRFARLHSLYDLIWKIYN
DRFYYDYVGRLPRAEQRQANLYALALRANNFERTGFKGLSRFIRMIDRVLESQNDLADVEVALPKKAVTLMTIHKSKGLE
FNYVFILNIDKKFSIQDMTSPLILSRRNGVGIKYLVDMKEELQEKLLPAVKVNMATLPYQLNKRELRLATLSEQMRLLYV
AMTRAEKKLYLVGKGSAEKLADKYSGKSENNHLPAAERESYMTFQDWLLAIQQAFSSENLHFKTVFVTDEDLTEDKIGMV
KGERLYNPDDLKDNRQSEDIARALDMLEAVEKLNKDYQAAINLPTVRTPSQVKKFYEPVMDTDGVDIMEKSPAAKLKFKL
PDFSEKKAVAAAALGSSLHELMQRLRLSEEVGMNDILQALEELPAEADIKKAIQTDKILAFFQTTDLGKLIQKNADKVRR
EAPFAMLETDSASGEKFVVRGIIDGYILFENRIILFDYKTDKFTNSQDIKQRYQGQMALYAQALSKSYGISAVEKYLILL
GGEQLEVVSV

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=336896 FY406_RS10270 WP_003088880.1 2070489..2074121(-) (rexA) [Streptococcus ratti strain ATCC 31377]
ATGACTTTTAAAAACTTTTTAAGTGCTCAAGAGATTGCCTCCCTGCAGCTTGAAGAGGCTGAATCAAATAAGCAGCAAAA
ACGCACTCCAGAACAGATTGAGGCCATCTACAGTTATGGCAATAATATTCTAGTTTCTGCCTCGGCAGGTTCTGGCAAAA
CCTTTGTCATGATTGAGCGTATTATGGATAAAATTCTGCGCGGAGTGAAAATTGAAGATCTCTTTATCTCAACCTTTACG
GTCAAGGCTGCAGGAGAGTTAAAAGAGCGTTTGGAGAAAAAATTAACTCAGCACTTACAGACAGCTTCTGATCCAAAACT
TAAGCAGTTTTTAGCTGAGGAGCTGGCCAGTGTTCAGACTGCTGATATCGGTACTATGGATGCCTTCACACAAAAGCTGG
TCAATCAATACGGCTACACACTGGGGATTTCACCCAGCTTTCGGATTATGCAGGACAAGAGTGAGCAGGACATCCTAAAA
AATGATGTCTTTGCAGATCTTTTTGCGGATTATATGCGCTCTGAAAACAGGTCTGTTTTTGTCAAGCTGGTTAAGAATTT
TGCTGGCAGCCGTAAGGACTCAGACCCTTTTAAGCAGCTGGTTTATAAGATTTACGATTTCAGTCAGGCTACGGACAATC
CTAAAAGCTGGCTGACAGACAGCTTTTTAAAAGGTGCTGAAACCTATACAGACTTTTCGGCTATTCCAGAGCAGGAAGTC
GCAGAATTTCTGGCAAGTATGGAAGATACTGCTAAGGCTTTGCGTGATCTGACAGATTTGGAAGACTATAAACAGCTGAC
TGGTAAAGGTGCTCCGACGGCCAATTATAAAAAGCATCTCAATATGATTGAAAAACTGCAAGACTGGGCTTGGAACTTTG
AAAGCCTATATGGGCGTGAAGGTCTTGGAAAGCTGGCCAATGATATTGCGGATCTCATTCCGTCCGGAGACAGTGTGACG
GTTGCTAAGGTCAAATACCCTGTTTTCAAAGCTCTTCAGGGACGCTTGGCTGAGCTGAGACATCTGGAGACAATCTTTGC
CTACCAAGCTGAGAGCCTGCCTTTACTGAGACTGCTGCAGCAGTTTGTTCTGGATTTCTCTGAGCAGTACCTGCAGGCTA
AAATGCAGGAAAATGCCTTTGAATTTTCAGATATTGCACACTTTGCTATTGAAATTTTGGAAGAAAATCCTGACATCAGG
CAGCTCTACCAAAATAAGTATCATGAGGTCATGGTGGATGAATATCAGGATAACAATCACACGCAGGAACGCATGCTGGA
GCTTTTGTCCAATGGGCATAATCGTTTCATGGTAGGAGATATTAAGCAGTCCATTTACCGCTTCCGTCAGGCAGATCCGC
AGATTTTTAACGCCAAATTCAAGGATTTTCAGGAACATCCTGAACACGGTAAGCTGATTTTGCTCAAGGAAAATTTCCGC
AGCCAGTCAGAAGTTTTAGCAACAGCAAACAGTGTTTTCAGCCACCTGATGGATGAAGCTGTCGGTGAGATTCTTTACGA
TGACAGCCATCAGCTGCTGGCAGGCAGCGACCGCCAAAAAGAAGCCCATCCAGAAAATGCAACACAGGTTTTGCTGTACG
ATACAGATGAAAATGAGGAGGCTCTGTCTGATGATGACAGCAATCAAATCAGTCCTTCGGAGGTTAAATTAGTTGCCAAG
GAAATTATCCGTCTTCATAATGAAGAGAAGGTTCCTTTTGAAGATATTACCCTGCTGGTTGCTTCAAGAACGCGCAATGA
TGGTATTATACAGACCTTTGACCACTATGGAATTCCTTTGGTGACAGACGGCGGCGAGCAAAATTATCTCAAGTCAGTTG
AGATTATGGTCATGCTGGATACCCTGCGTTCTATTGATAATCCGCTTAATGACTATGCCTTGACGGCACTCTTGCGCTCG
CCCATGTTTGCTTTTGATGAAGATGAGCTGACGCGCTTAGCGCTTCAAAAGACATCGGACAGTCATAAGGAAAATCTCTA
TGAAAAAATGCAGAACGCTATAAATAAACAAGGCCAGCATCCGGAGCTTATGACACCGGACTTAGCTGCCAAGCTGCAGG
CTTTCTTAGATGTCTTTGGCAGCTGGCGCCGATTTGCTCGCTTGCATTCGCTCTATGATCTGATTTGGAAAATTTATAAC
GACAGATTTTACTATGATTATGTCGGACGTCTGCCAAGAGCAGAACAGCGCCAGGCCAATCTCTATGCGCTGGCTCTGCG
GGCTAACAATTTCGAGCGGACGGGATTTAAGGGGCTGTCACGCTTTATTCGGATGATTGATCGTGTTTTAGAAAGCCAGA
ATGATTTAGCTGATGTTGAGGTTGCCCTGCCTAAGAAGGCTGTTACGCTCATGACCATCCATAAGAGTAAGGGGCTGGAA
TTCAACTATGTCTTTATCCTTAATATTGACAAGAAGTTCAGCATTCAAGACATGACTTCGCCGCTCATTTTATCGCGTCG
CAATGGCGTAGGGATCAAGTATTTGGTTGATATGAAAGAAGAACTGCAGGAAAAACTCCTGCCGGCTGTCAAGGTTAATA
TGGCAACGCTGCCTTATCAGCTTAACAAACGCGAATTGCGTCTGGCTACCTTATCAGAGCAGATGCGGCTTCTCTATGTC
GCCATGACACGGGCGGAGAAAAAACTATATCTGGTTGGAAAGGGCAGTGCGGAAAAGCTGGCAGACAAATACAGCGGAAA
ATCTGAAAATAATCATCTGCCGGCAGCCGAGCGTGAAAGCTATATGACCTTTCAAGACTGGCTTTTAGCTATTCAGCAGG
CTTTCAGCAGTGAAAATTTACATTTTAAAACAGTCTTTGTGACAGATGAAGACCTAACTGAAGATAAAATCGGAATGGTT
AAAGGAGAACGTCTCTACAATCCTGATGACCTTAAGGATAATCGCCAGTCAGAAGATATTGCGCGTGCTTTGGATATGCT
GGAAGCTGTCGAGAAGCTCAACAAAGATTATCAGGCAGCCATCAATCTGCCAACTGTCCGCACGCCCAGTCAGGTCAAGA
AATTCTATGAACCTGTCATGGACACTGATGGTGTTGACATTATGGAGAAAAGCCCTGCTGCCAAACTGAAGTTCAAGCTT
CCGGATTTTTCTGAGAAAAAAGCCGTGGCGGCTGCTGCTCTTGGTTCCAGTTTACACGAATTGATGCAGCGCCTTCGCTT
AAGTGAAGAAGTCGGCATGAATGATATCTTACAGGCCTTAGAAGAGCTGCCGGCTGAAGCTGATATCAAAAAGGCCATCC
AGACGGACAAGATTTTGGCTTTCTTTCAGACAACTGATTTAGGAAAATTAATCCAGAAAAATGCTGACAAAGTCCGCCGT
GAAGCGCCTTTTGCCATGCTGGAAACAGACTCTGCAAGCGGAGAAAAATTTGTTGTACGCGGTATCATTGACGGCTATAT
TCTTTTTGAAAACCGCATTATTCTCTTTGATTATAAGACTGATAAATTTACCAACAGTCAGGACATCAAGCAGCGCTATC
AAGGTCAGATGGCACTGTATGCCCAGGCCTTAAGCAAATCCTATGGTATCTCAGCTGTTGAAAAATACTTGATTTTACTG
GGCGGTGAGCAACTGGAAGTTGTATCAGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(473-891)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1042-1187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.918

100

0.526