Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FY406_RS09705 Genome accession   NZ_CP043405
Coordinates   1950048..1951826 (-) Length   592 a.a.
NCBI ID   WP_003088629.1    Uniprot ID   A0ABN0GUH2
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1945048..1956826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS09680 (FY406_09680) - 1945832..1946416 (-) 585 WP_003088620.1 uracil-DNA glycosylase family protein -
  FY406_RS09685 (FY406_09685) pepV 1946518..1947924 (-) 1407 WP_003088622.1 dipeptidase PepV -
  FY406_RS09690 (FY406_09690) - 1947938..1948540 (-) 603 WP_003088623.1 nitroreductase family protein -
  FY406_RS09695 (FY406_09695) - 1948687..1949013 (-) 327 WP_003088625.1 bacteriocin immunity protein -
  FY406_RS09700 (FY406_09700) - 1949226..1949924 (-) 699 WP_003088628.1 GNAT family N-acetyltransferase -
  FY406_RS09705 (FY406_09705) uvrC 1950048..1951826 (-) 1779 WP_003088629.1 excinuclease ABC subunit UvrC Machinery gene
  FY406_RS10500 - 1951900..1952235 (+) 336 Protein_1863 ISL3 family transposase -
  FY406_RS09710 (FY406_09710) - 1952415..1952648 (-) 234 WP_003088630.1 hypothetical protein -
  FY406_RS10505 - 1952723..1953512 (-) 790 Protein_1865 hypothetical protein -
  FY406_RS09720 (FY406_09720) - 1953527..1954567 (-) 1041 WP_003088633.1 hypothetical protein -
  FY406_RS09725 (FY406_09725) - 1954569..1955630 (-) 1062 WP_003088635.1 YaaC family protein -
  FY406_RS09730 (FY406_09730) - 1955660..1956022 (-) 363 WP_003088638.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 68514.00 Da        Isoelectric Point: 9.3359

>NTDB_id=336891 FY406_RS09705 WP_003088629.1 1950048..1951826(-) (uvrC) [Streptococcus ratti strain ATCC 31377]
MNQLIQHKLELLPDSPGCYLHKDKKGTIIYVGKAKNLKNRVRSYFHGSHDTKTEMLVSEIEDFEYIVTGSNIEALLLEIN
LIQENHPKYNIRLRDDKSYPFIKITNERYPRLLITRQVKKDKGHYFGPYPDVGAANEIKKLLDRIFPFKKCTNPPEKVCF
YYHIGQCSAHTICHTDQAYYDKMIDDVSNFLNGYDDKIVNGLKEKMQTMAENMEFERAAEYRDLISAIGVLRTKQRVMAQ
DLIDRDIFGYYVEKGWMCVQVFFVRQGKLIQRDVNMFPYYNEPEEDFLTYLGQFYQDKRHFIPKEIFIPKDIDEELVKAL
VNTKIIKPQRGEKKQLVNLATKNARVSLQQKFDLLERDLKKTQGAIENIGELLNIPKPVRIEAFDNSNIQGTSSVAAMVV
FENGKPSKKEYRKYKIKTVTGPDDYASMREVIYRRYSRVMRDGLTPPDLIIIDGGQGQVNVARDVIENKLGLNIPIAGLQ
KNDKHQTHELLFGDPLAVVELPRNSEEFFLLQRIQDEVHRFAITFHRQLRGKNSFSSKLDGIAGLGPKRKQLLMKHFKSL
PKIKAASTDEIIALGIPQKVAENVQEKLQEKD

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=336891 FY406_RS09705 WP_003088629.1 1950048..1951826(-) (uvrC) [Streptococcus ratti strain ATCC 31377]
ATGAATCAATTGATACAGCATAAATTAGAACTTTTGCCGGACAGTCCCGGCTGCTATCTTCACAAGGATAAAAAGGGAAC
GATTATTTATGTGGGGAAGGCTAAAAATTTAAAGAATCGTGTGCGCAGCTATTTTCACGGCAGCCATGACACTAAGACAG
AGATGCTGGTGTCAGAAATCGAAGATTTTGAATACATTGTGACGGGTTCCAATATTGAGGCCCTTCTTTTAGAAATTAAT
CTCATTCAGGAAAACCACCCCAAATACAATATCAGACTCAGAGATGACAAGTCTTATCCATTTATTAAGATTACCAATGA
AAGATACCCTCGCCTGTTGATTACGCGTCAGGTCAAAAAAGATAAGGGGCATTACTTTGGTCCCTATCCTGATGTCGGGG
CTGCTAATGAAATTAAAAAGCTGCTGGACAGGATTTTCCCCTTTAAGAAATGTACCAATCCTCCGGAAAAGGTTTGCTTT
TACTATCACATCGGCCAGTGTTCCGCTCACACCATTTGCCATACTGACCAGGCCTATTACGATAAGATGATAGACGATGT
CAGCAATTTTTTAAATGGCTATGACGATAAGATTGTCAATGGGCTCAAGGAAAAAATGCAGACCATGGCTGAAAATATGG
AATTTGAACGGGCTGCGGAGTACCGCGATTTGATCAGTGCGATCGGTGTTCTCAGAACCAAGCAGCGGGTAATGGCTCAG
GATTTGATTGACCGGGACATTTTTGGTTATTACGTGGAAAAGGGCTGGATGTGCGTGCAGGTCTTTTTTGTCCGGCAAGG
CAAGCTCATCCAGCGCGATGTCAATATGTTTCCTTATTACAACGAGCCCGAAGAAGATTTTCTGACCTATTTGGGGCAGT
TCTATCAAGATAAACGTCACTTTATTCCCAAAGAGATTTTTATTCCTAAGGATATTGACGAAGAATTGGTCAAGGCTCTG
GTCAATACTAAGATTATCAAACCGCAGCGCGGTGAGAAGAAGCAGTTGGTTAATTTAGCGACGAAAAATGCCCGCGTCAG
CCTGCAGCAAAAATTTGACCTGCTGGAAAGGGATTTGAAAAAAACACAGGGTGCTATTGAAAATATTGGAGAGTTACTTA
ACATCCCTAAGCCGGTGCGCATTGAAGCTTTTGATAACTCCAATATCCAAGGAACCAGTTCGGTTGCGGCTATGGTCGTT
TTTGAAAATGGCAAGCCCAGTAAAAAAGAATACCGCAAATATAAAATCAAAACCGTTACTGGTCCGGATGATTATGCCAG
CATGCGCGAGGTTATTTACCGCAGATACAGCCGCGTCATGCGAGATGGTCTGACACCGCCAGACCTTATTATCATTGATG
GGGGCCAAGGTCAGGTCAATGTGGCGCGTGATGTCATTGAAAATAAATTGGGACTTAATATTCCTATCGCTGGTTTGCAG
AAAAATGACAAGCACCAGACCCATGAACTGCTCTTTGGCGATCCGCTGGCAGTGGTCGAACTGCCTAGAAATTCAGAAGA
GTTCTTTCTCCTGCAGCGCATCCAAGATGAAGTGCACCGCTTTGCCATTACCTTCCATCGCCAGCTGCGCGGTAAAAATT
CCTTCTCTTCCAAACTAGATGGCATCGCAGGACTTGGACCAAAGCGCAAGCAGCTGCTTATGAAGCATTTTAAGAGTCTG
CCCAAGATTAAAGCGGCCAGCACGGATGAGATAATTGCTCTGGGAATCCCACAAAAGGTCGCAGAAAATGTGCAGGAGAA
GCTGCAGGAAAAAGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(197-228)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

Helix-hairpin-helix domain (HHH_5)

(538-590)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(371-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

79.762

99.324

0.792
  uvrC Streptococcus pneumoniae R6

79.422

99.324

0.789
  uvrC Streptococcus pneumoniae D39

79.422

99.324

0.789

Multiple sequence alignment