Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   FY406_RS08260 Genome accession   NZ_CP043405
Coordinates   1653779..1654207 (+) Length   142 a.a.
NCBI ID   WP_003088066.1    Uniprot ID   A0ABP2QY65
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648779..1659207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS08235 (FY406_08235) - 1649263..1650051 (+) 789 WP_003088053.1 ABC transporter permease subunit -
  FY406_RS10480 - 1650547..1650753 (-) 207 Protein_1573 DUF3021 domain-containing protein -
  FY406_RS08240 (FY406_08240) queF 1650833..1651321 (-) 489 WP_003088057.1 preQ(1) synthase -
  FY406_RS08245 (FY406_08245) queE 1651335..1652051 (-) 717 WP_003088059.1 7-carboxy-7-deazaguanine synthase QueE -
  FY406_RS08250 (FY406_08250) queD 1652048..1652494 (-) 447 WP_003088062.1 6-carboxytetrahydropterin synthase QueD -
  FY406_RS08255 (FY406_08255) queC 1652494..1653147 (-) 654 WP_003088064.1 7-cyano-7-deazaguanine synthase QueC -
  FY406_RS08260 (FY406_08260) rcrR 1653779..1654207 (+) 429 WP_003088066.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FY406_RS08265 (FY406_08265) rcrP 1654217..1656019 (+) 1803 WP_003088067.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08270 (FY406_08270) rcrQ 1656009..1657769 (+) 1761 WP_003088069.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08275 (FY406_08275) tpx 1657943..1658437 (+) 495 WP_003088071.1 thiol peroxidase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16425.07 Da        Isoelectric Point: 9.8176

>NTDB_id=336874 FY406_RS08260 WP_003088066.1 1653779..1654207(+) (rcrR) [Streptococcus ratti strain ATCC 31377]
MKEPFDLFRDFINTVETTVQELAKENNIEHLGGPQGHTVSYLFKNQDKEIFIKDIEERLHISKSVASNLIKRMEKNGFIS
IIPSQKDKRCKQIILTPLGLNKAGDIITFHKKIHEQLLKGIDKADLVTARRVFEQIKQNLEK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=336874 FY406_RS08260 WP_003088066.1 1653779..1654207(+) (rcrR) [Streptococcus ratti strain ATCC 31377]
ATGAAAGAGCCTTTCGATTTGTTTAGAGATTTTATCAATACAGTGGAAACAACAGTCCAGGAGTTGGCTAAAGAAAATAA
CATTGAACATTTGGGAGGGCCTCAGGGACATACAGTTAGTTATCTTTTTAAGAATCAAGATAAAGAAATTTTTATTAAGG
ATATTGAGGAAAGACTGCACATTTCAAAGTCAGTTGCCAGCAATCTCATCAAGAGAATGGAGAAAAACGGCTTTATTTCC
ATCATTCCCTCTCAAAAAGATAAGCGCTGCAAACAAATTATTTTGACACCTTTAGGCCTTAATAAGGCAGGGGACATTAT
CACCTTTCATAAAAAAATCCATGAGCAGCTGCTGAAAGGTATTGATAAAGCAGATCTTGTGACTGCTCGCAGGGTTTTTG
AACAAATTAAACAAAATTTAGAAAAATAG

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(45-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

64.085

100

0.641

Multiple sequence alignment