Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FY406_RS08270 Genome accession   NZ_CP043405
Coordinates   1656009..1657769 (+) Length   586 a.a.
NCBI ID   WP_003088069.1    Uniprot ID   A0ABN0GTZ2
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1651009..1662769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS08245 (FY406_08245) queE 1651335..1652051 (-) 717 WP_003088059.1 7-carboxy-7-deazaguanine synthase QueE -
  FY406_RS08250 (FY406_08250) queD 1652048..1652494 (-) 447 WP_003088062.1 6-carboxytetrahydropterin synthase QueD -
  FY406_RS08255 (FY406_08255) queC 1652494..1653147 (-) 654 WP_003088064.1 7-cyano-7-deazaguanine synthase QueC -
  FY406_RS08260 (FY406_08260) rcrR 1653779..1654207 (+) 429 WP_003088066.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FY406_RS08265 (FY406_08265) rcrP 1654217..1656019 (+) 1803 WP_003088067.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08270 (FY406_08270) rcrQ 1656009..1657769 (+) 1761 WP_003088069.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08275 (FY406_08275) tpx 1657943..1658437 (+) 495 WP_003088071.1 thiol peroxidase -
  FY406_RS08285 (FY406_08285) cipB 1659172..1659402 (+) 231 WP_003088075.1 Blp family class II bacteriocin Regulator
  FY406_RS08290 (FY406_08290) - 1659526..1659951 (+) 426 WP_003088076.1 hypothetical protein -
  FY406_RS08295 (FY406_08295) - 1660174..1660797 (+) 624 WP_003088077.1 GTP pyrophosphokinase family protein -
  FY406_RS08300 (FY406_08300) - 1660799..1661500 (+) 702 WP_003088078.1 response regulator transcription factor -
  FY406_RS08305 (FY406_08305) - 1661490..1662725 (+) 1236 WP_174267028.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64854.69 Da        Isoelectric Point: 5.9238

>NTDB_id=336876 FY406_RS08270 WP_003088069.1 1656009..1657769(+) (rcrQ) [Streptococcus ratti strain ATCC 31377]
MDNKKKSLLSQMAPYLKGYKALFALAVVFTIASSTITVIGPDRLKEMTDTVTKGLAGKIDLDKIAEIAFTLALMYIGGAL
VSYAASFIVSTLIQKFSQRLRNAIAHKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAVVLLIGSIFMM
IKTNGALAATAILSVFAGFALSSIIMVKSQPLFKRQQKNLANVSGYVEEIYSGHNVVSSYNARRQSKEQFEVLNNQLFSS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGARMALNGDVTMGTIVAFMTYVRIFTQPISQIAQGITQLQSANAAMGRVFE
FLNEEEMEAEDHKQRQLDTVKGDVSFDNVFFGYQPDKTIIHDFSAHAKAGQKVAIVGPTGAGKTTIVNLLMRFYEVDKGS
ISIDGVNVHDMKREEVHDAFAMVLQDTWLFEGTVKENLIYNQEHITEEQVIAAAKAVGVHHFIKTLPEGYDTVLDDSVTL
SIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDDLMAQDGFYADLYNSQFTEEDDAA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=336876 FY406_RS08270 WP_003088069.1 1656009..1657769(+) (rcrQ) [Streptococcus ratti strain ATCC 31377]
ATGGACAATAAAAAGAAATCATTATTAAGTCAGATGGCTCCTTATCTTAAAGGGTATAAGGCCTTATTTGCTCTTGCTGT
TGTTTTTACAATTGCTTCAAGTACGATTACGGTTATTGGGCCTGACCGACTTAAGGAAATGACCGATACGGTGACCAAGG
GCCTTGCAGGCAAGATTGATCTGGATAAAATTGCTGAAATTGCCTTTACTCTGGCACTAATGTATATTGGCGGAGCTCTG
GTTTCTTATGCTGCAAGCTTTATTGTATCAACCTTGATTCAAAAATTCTCGCAGCGTCTGCGCAATGCTATTGCCCATAA
AATCAACAAGGTACCGCTTAAGTACTTTGACAGCCACTCACAAGGAGACACCTTATCTCGCGTGACCAATGATGTGGATT
TGATGACCCAATCATTTAACCAAAGTTTGGTTTCAATGGTAGCAGCTGTCGTCCTTTTAATCGGTTCCATTTTTATGATG
ATCAAGACAAACGGCGCTCTGGCCGCAACAGCCATTTTATCTGTCTTTGCAGGTTTTGCTCTGTCAAGCATCATCATGGT
TAAAAGCCAGCCGCTCTTTAAACGTCAGCAAAAGAATCTGGCTAATGTCAGTGGCTATGTTGAAGAGATTTATTCCGGAC
ACAATGTCGTTTCTAGCTATAATGCGCGCCGGCAAAGCAAGGAGCAGTTTGAAGTCTTAAATAACCAGTTGTTTTCTAGT
ATGTGGAAGTCACAGTTCTTCTCTGGAATCATGATGCCCTTGATGCAGTTCATTGGTAATTTTGGCTATGTTATGGTCTG
TATCGTAGGAGCCCGCATGGCGTTAAACGGCGATGTGACTATGGGAACTATCGTTGCTTTCATGACTTATGTCCGCATCT
TTACTCAGCCTATTTCACAAATCGCACAGGGTATCACCCAGCTTCAGTCAGCCAATGCTGCCATGGGGCGCGTTTTTGAA
TTTCTGAATGAAGAAGAGATGGAAGCAGAAGATCACAAGCAAAGACAGCTTGATACCGTTAAAGGAGATGTTAGCTTTGA
CAATGTCTTCTTTGGCTATCAGCCGGATAAAACCATTATCCATGATTTTTCAGCCCATGCAAAAGCCGGACAGAAAGTGG
CTATTGTCGGTCCGACAGGTGCTGGTAAAACAACCATCGTCAATCTGCTGATGCGCTTTTATGAAGTTGATAAGGGCAGC
ATTTCCATCGATGGTGTCAATGTGCACGACATGAAGCGTGAAGAGGTGCATGATGCCTTTGCTATGGTTCTTCAGGATAC
CTGGCTTTTCGAGGGAACTGTTAAGGAAAATCTGATTTACAATCAGGAACACATTACAGAGGAGCAAGTCATTGCAGCAG
CTAAAGCTGTCGGTGTTCACCATTTCATCAAAACACTGCCTGAGGGTTATGATACTGTTTTAGACGATTCGGTAACCTTA
TCCATTGGTCAAAAGCAGCTCTTGACGATTGCGCGGGCTCTGCTCAAAGATTCACCGCTGCTTATTCTTGACGAAGCAAC
ATCATCTGTTGATACCAGAACAGAAGAGCTGATTCAAAAAGCGATGGATAAGCTGATGGAAGGCAGAACCTCCTTCGTCA
TTGCTCACCGCCTCTCAACTATTCGCAATGCGGATCTCATTCTTGTAATGAAAGACGGCAACATTATTGAGCAAGGCAAT
CACGATGATCTTATGGCTCAAGATGGCTTCTATGCTGATCTTTACAACAGCCAGTTCACGGAAGAAGATGACGCAGCTTA
A

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

89.347

99.317

0.887

Multiple sequence alignment