Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   FY406_RS05360 Genome accession   NZ_CP043405
Coordinates   1082598..1083632 (+) Length   344 a.a.
NCBI ID   WP_003086326.1    Uniprot ID   A0ABN0GXL7
Organism   Streptococcus ratti strain ATCC 31377     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077598..1088632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS05330 (FY406_05330) tsaE 1078804..1079247 (+) 444 WP_003086317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FY406_RS05335 (FY406_05335) - 1079240..1079761 (+) 522 WP_003086318.1 GNAT family N-acetyltransferase -
  FY406_RS05340 (FY406_05340) brpA 1079772..1081028 (+) 1257 WP_003086319.1 biofilm formation/cell division transcriptional regulator BrpA -
  FY406_RS05345 (FY406_05345) - 1081095..1081388 (-) 294 WP_003086321.1 hypothetical protein -
  FY406_RS05350 (FY406_05350) - 1081385..1081804 (-) 420 WP_003086323.1 HIT family protein -
  FY406_RS05355 (FY406_05355) pptA 1081869..1082594 (+) 726 WP_003086324.1 ABC transporter ATP-binding protein Regulator
  FY406_RS05360 (FY406_05360) pptB 1082598..1083632 (+) 1035 WP_003086326.1 ABC transporter permease Regulator
  FY406_RS05365 (FY406_05365) ccrZ 1083691..1084473 (+) 783 WP_003086328.1 cell cycle regulator CcrZ -
  FY406_RS05370 (FY406_05370) trmB 1084483..1085118 (+) 636 WP_003086330.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FY406_RS05380 (FY406_05380) - 1085327..1085584 (+) 258 WP_003086332.1 hypothetical protein -
  FY406_RS05385 (FY406_05385) rimP 1085641..1086168 (+) 528 WP_003086334.1 ribosome maturation factor RimP -
  FY406_RS05390 (FY406_05390) nusA 1086203..1087396 (+) 1194 WP_003086336.1 transcription termination factor NusA -
  FY406_RS05395 (FY406_05395) rnpM 1087415..1087711 (+) 297 WP_003086338.1 RNase P modulator RnpM -
  FY406_RS05400 (FY406_05400) - 1087704..1088006 (+) 303 WP_003086340.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40112.43 Da        Isoelectric Point: 10.7264

>NTDB_id=336856 FY406_RS05360 WP_003086326.1 1082598..1083632(+) (pptB) [Streptococcus ratti strain ATCC 31377]
MKTIFSKRRFAFLTQSSKYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHLPVIIILSVAVAALLFWGNSATYLEP
ADQHFLIVKEKEIISLIKQAQKRAFFFWGTLQLIFLLILAPLFLRLGMSLLSFALFLLVFLALKWLIIAKKVQIFVHKGK
LDWAKAISQERKRQQIILKFFSLFTNVKGLSASVKRRSYLDFVTVFLSRKHSYTWGHLYLRAFLRSEDYLGLTLRLGILS
LLSLVFIANPLISAGLAVLFNYLLLFQLLALYKHYDYQYLTRIFPIDSKAKKANLKQFLRTVLYLLTAVEMCVSFSWQKA
LFLAAAMIILNELYLSYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=336856 FY406_RS05360 WP_003086326.1 1082598..1083632(+) (pptB) [Streptococcus ratti strain ATCC 31377]
ATGAAAACAATATTTAGCAAAAGGCGGTTCGCTTTTCTCACTCAAAGCAGTAAGTACCTGCGCTATGTGTTTAATGACCA
TTTTGTTTTGGTGCTCATTTTTCTGCTGGGCTTTCTCATGGTTCAGTACAGTCAGTTGTTAAAGCATTTTCCAGCCAATC
ATCTGCCTGTCATCATCATTTTATCTGTGGCGGTTGCAGCTTTGCTTTTTTGGGGAAATTCAGCTACTTATCTGGAGCCG
GCTGATCAGCACTTTTTAATAGTGAAGGAAAAAGAAATTATTTCCCTAATCAAACAGGCTCAAAAGCGTGCCTTCTTCTT
TTGGGGAACGTTGCAGCTTATTTTTCTATTGATTTTAGCGCCCTTATTTTTGCGCTTGGGAATGTCTTTGCTTTCTTTTG
CGCTCTTTTTGCTTGTTTTTCTTGCTTTAAAATGGCTGATTATTGCCAAAAAAGTGCAGATTTTTGTGCATAAGGGCAAA
CTGGACTGGGCCAAGGCTATCAGCCAAGAGAGAAAACGTCAGCAGATAATTTTAAAATTCTTTTCTCTGTTTACCAATGT
TAAGGGACTTTCTGCCAGTGTTAAACGCCGCTCTTATCTGGATTTTGTGACGGTTTTTCTATCGCGAAAGCACAGTTATA
CTTGGGGGCATCTCTATTTACGTGCTTTTTTGCGGAGCGAGGATTATCTGGGACTTACTCTGCGTTTGGGCATTTTAAGT
TTGCTAAGTCTTGTTTTTATTGCCAATCCTTTGATATCAGCAGGCTTAGCTGTGCTCTTTAATTATTTGTTGCTGTTTCA
GCTGCTGGCCTTGTATAAGCACTATGATTATCAGTATCTGACAAGGATTTTTCCCATTGACAGCAAAGCTAAAAAAGCGA
ATCTCAAGCAATTTTTGAGGACTGTCTTATACCTTTTAACGGCAGTTGAAATGTGCGTTAGCTTTTCTTGGCAGAAGGCG
CTTTTTCTAGCGGCAGCAATGATTATTTTAAATGAACTCTACCTATCTTATAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.674

100

0.477
  pptB Streptococcus salivarius strain HSISS4

47.674

100

0.477