Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FY406_RS00765 Genome accession   NZ_CP043405
Coordinates   168951..169550 (-) Length   199 a.a.
NCBI ID   WP_003089271.1    Uniprot ID   A0ABP2QZ88
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 163951..174550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS00745 (FY406_00745) - 164003..165175 (-) 1173 WP_003089263.1 hypothetical protein -
  FY406_RS00750 (FY406_00750) murF 165245..166615 (-) 1371 WP_003089265.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FY406_RS00755 (FY406_00755) - 167149..167709 (+) 561 WP_003089267.1 folate family ECF transporter S component -
  FY406_RS00760 (FY406_00760) - 167765..168811 (-) 1047 WP_003089269.1 D-alanine--D-alanine ligase -
  FY406_RS00765 (FY406_00765) recR 168951..169550 (-) 600 WP_003089271.1 recombination mediator RecR Machinery gene
  FY406_RS00770 (FY406_00770) pbp2b 169560..171638 (-) 2079 WP_003089273.1 penicillin-binding protein PBP2B -
  FY406_RS00775 (FY406_00775) - 171896..172588 (-) 693 WP_003089274.1 phosphoglycerate mutase -
  FY406_RS00780 (FY406_00780) - 172693..173013 (-) 321 WP_003089277.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21741.80 Da        Isoelectric Point: 4.5089

>NTDB_id=336797 FY406_RS00765 WP_003089271.1 168951..169550(-) (recR) [Streptococcus ratti strain ATCC 31377]
MLYPTPIAKLIESFTKLPGIGIKTATRLAFYTIGMSDEDVNDFAKNLLAAKRELTYCSVCGNLTDDDPCSICTDDSRDNS
TILVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGIGPDDINLKSLLTRLRDNSDITEVIIATNATADGEATAMYISRV
LKPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=336797 FY406_RS00765 WP_003089271.1 168951..169550(-) (recR) [Streptococcus ratti strain ATCC 31377]
ATGCTTTACCCAACTCCCATAGCTAAATTGATTGAAAGCTTTACCAAGCTGCCCGGAATTGGGATTAAAACGGCGACACG
TCTAGCTTTCTATACAATTGGTATGAGCGATGAAGATGTTAATGACTTTGCCAAAAACCTCTTAGCTGCCAAGCGGGAGC
TGACCTATTGTTCAGTCTGCGGCAATCTGACCGATGATGATCCTTGCAGCATCTGTACAGATGACAGTAGGGATAATTCG
ACTATTCTTGTGGTAGAAGACAGCAAGGATGTGTCAGCTATGGAAAAAATTCAGGAGTATCATGGCCTCTATCATGTTTT
ACATGGGCTCATCTCTCCCATGAACGGTATTGGCCCAGATGATATTAATCTGAAAAGCCTTTTGACACGCTTGCGGGATA
ATAGTGACATTACTGAAGTCATTATCGCAACCAACGCAACAGCAGACGGGGAAGCAACCGCTATGTATATCTCACGTGTC
CTAAAACCAGCAGGAATCAAGGTAACACGTTTAGCGCGTGGATTGGCTGTTGGCTCAGATATTGAATACGCCGACGAAGT
GACCCTCCTGCGTGCTATTGAAAACCGAACAGAATTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

85.427

100

0.854
  recR Bacillus subtilis subsp. subtilis str. 168

65.829

100

0.658
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.49

98.492

0.487

Multiple sequence alignment