Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   EQH44_RS05700 Genome accession   NZ_CP035236
Coordinates   1145316..1146665 (-) Length   449 a.a.
NCBI ID   WP_061645482.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1902282     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140316..1151665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH44_RS05675 (EQH44_06010) - 1141971..1142957 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  EQH44_RS05680 (EQH44_06015) - 1143217..1143869 (-) 653 Protein_1141 potassium channel family protein -
  EQH44_RS05685 (EQH44_06020) - 1143916..1144170 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  EQH44_RS05690 (EQH44_06025) relB 1144172..1144414 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  EQH44_RS05695 (EQH44_06030) vicX 1144505..1145314 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  EQH44_RS05700 (EQH44_06035) micB 1145316..1146665 (-) 1350 WP_061645482.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EQH44_RS05705 (EQH44_06040) micA 1146658..1147362 (-) 705 WP_000722076.1 response regulator YycF Regulator
  EQH44_RS05710 (EQH44_06045) mutY 1147417..1148592 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  EQH44_RS10725 - 1148689..1148814 (+) 126 WP_001818232.1 hypothetical protein -
  EQH44_RS05715 (EQH44_06050) - 1148920..1150590 (-) 1671 WP_000845292.1 formate--tetrahydrofolate ligase -
  EQH44_RS05720 (EQH44_06055) coaB 1150820..1151509 (+) 690 WP_000699495.1 phosphopantothenate--cysteine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51740.47 Da        Isoelectric Point: 5.0403

>NTDB_id=336742 EQH44_RS05700 WP_061645482.1 1145316..1146665(-) (micB) [Streptococcus pneumoniae strain TVO_1902282]
MLDLLKQTIFTRDFIFILILLGFILVVTLLLLENRRDNIRLKQINQKVKDLIAGDYSKVLDMQGGSEITNITNNLNDLSE
VIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILELLKIEENYELRDLITQSPE
LLLDSQDINGEYLNLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALC
ETVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIW
MEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLG
LSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVKEEVWEDEVED

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=336742 EQH44_RS05700 WP_061645482.1 1145316..1146665(-) (micB) [Streptococcus pneumoniae strain TVO_1902282]
ATGCTTGATTTACTGAAACAAACCATTTTTACCAGAGATTTTATCTTTATCCTGATTTTGTTAGGTTTCATCCTTGTTGT
GACCCTCTTATTACTGGAAAATAGACGTGATAATATTCGGTTGAAGCAAATCAATCAAAAGGTTAAAGATTTGATTGCAG
GAGATTATTCCAAGGTTCTTGATATGCAAGGTGGGTCTGAAATCACCAATATTACCAATAATTTGAATGACTTGTCGGAG
GTTATTCGTCTCACTCAGGAAAATCTAGAACAAGAGAGTAAGAGGCTAAATAGTATTCTGTTTTATATGACAGATGGGGT
TCTTGCGACTAACCGTCGGGGTCAGATTATCATGATTAACGATACAGCCAAGAAGCAACTGGGGTTGGTTAAGGAAGATG
TTCTGAATAGAAGCATTTTGGAATTGCTCAAGATAGAAGAAAACTATGAATTGCGTGATTTGATTACCCAAAGTCCAGAA
TTGTTGCTAGATTCCCAAGATATCAATGGCGAATATTTGAACCTTCGAGTTCGCTTTGCCTTGATACGTCGAGAGTCTGG
CTTTATTTCAGGTTTGGTGGCTGTTTTGCATGATACGACGGAGCAGGAGAAGGAAGAACGCGAACGAAGACTCTTTGTTT
CCAATGTTAGCCATGAGTTACGGACTCCTCTGACTAGCGTAAAATCCTATCTTGAAGCCTTGGATGAGGGGGCTTTGTGT
GAAACTGTAGCACCAGACTTTATCAAGGTTTCTCTTGATGAGACCAACCGTATGATGCGCATGGTGACGGATCTCCTCCA
TCTTTCACGTATTGATAATGCTACCAGTCACCTAGATGTGGAACTGATTAACTTCACTGCTTTTATTACCTTTATCCTCA
ATCGTTTTGACAAGATGAAAGGACAGGAAAAGGAGAAAAAATATGAGCTGGTGAGAGATTATCCCATCAATTCTATCTGG
ATGGAAATTGATACAGATAAGATGACGCAGGTTGTCGACAATATTTTAAATAATGCTATTAAGTATTCGCCAGATGGGGG
TAAAATCACTGTCAGAATGAAGACAACTGAAGACCAGATGATTTTATCCATTTCTGACCACGGTTTGGGGATTCCTAAGC
AGGATTTACCACGTATCTTTGACCGTTTCTATCGTGTGGATCGTGCTAGAAGTCGTGCACAAGGTGGTACAGGTCTAGGA
CTGTCTATCGCTAAAGAAATTATCAAACAACATAAGGGCTTTATTTGGGCCAAGAGTGAATACGGCAAGGGTTCAACCTT
TACCATTGTACTCCCTTATGATAAGGATGCAGTGAAAGAAGAAGTATGGGAGGATGAAGTAGAAGACTAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(98-198)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

99.555

100

0.996
  vicK Streptococcus mutans UA159

69.652

89.532

0.624

Multiple sequence alignment