Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EQZ20_RS18800 Genome accession   NZ_CP035232
Coordinates   3634702..3635340 (-) Length   212 a.a.
NCBI ID   WP_046131689.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM103574     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629702..3640340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ20_RS18765 (EQZ20_18765) - 3630881..3631312 (+) 432 WP_046131682.1 Na(+)/H(+) antiporter subunit B -
  EQZ20_RS18770 (EQZ20_18770) - 3631312..3631653 (+) 342 WP_046131683.1 Na(+)/H(+) antiporter subunit C -
  EQZ20_RS18775 (EQZ20_18775) - 3631646..3633124 (+) 1479 WP_046131684.1 Na+/H+ antiporter subunit D -
  EQZ20_RS18780 (EQZ20_18780) - 3633130..3633606 (+) 477 WP_046131685.1 Na+/H+ antiporter subunit E -
  EQZ20_RS18785 (EQZ20_18785) - 3633606..3633890 (+) 285 WP_046131686.1 Na(+)/H(+) antiporter subunit F1 -
  EQZ20_RS18790 (EQZ20_18790) mnhG 3633874..3634248 (+) 375 WP_046131687.1 monovalent cation/H(+) antiporter subunit G -
  EQZ20_RS18795 (EQZ20_18795) - 3634290..3634682 (-) 393 WP_046131688.1 hotdog fold thioesterase -
  EQZ20_RS18800 (EQZ20_18800) comA 3634702..3635340 (-) 639 WP_046131689.1 response regulator transcription factor Regulator
  EQZ20_RS18805 (EQZ20_18805) comP 3635423..3637741 (-) 2319 WP_046131690.1 ATP-binding protein Regulator
  EQZ20_RS18810 (EQZ20_18810) comX 3637782..3637946 (-) 165 WP_046131691.1 competence pheromone ComX -
  EQZ20_RS18815 (EQZ20_18815) - 3637957..3638829 (-) 873 WP_046131716.1 polyprenyl synthetase family protein -
  EQZ20_RS18820 (EQZ20_18820) degQ 3639019..3639159 (-) 141 WP_046131692.1 degradation enzyme regulation protein DegQ Regulator
  EQZ20_RS18825 (EQZ20_18825) - 3639652..3639999 (+) 348 WP_231947384.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24140.51 Da        Isoelectric Point: 4.6583

>NTDB_id=336548 EQZ20_RS18800 WP_046131689.1 3634702..3635340(-) (comA) [Bacillus glycinifermentans strain SRCM103574]
MRRLLVIDDHPAVMEGTKAILETNQDFLVDCLSPEASEQFLTKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYLKDLITKQKTKSSSQETQHDVLTERERLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFNKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=336548 EQZ20_RS18800 WP_046131689.1 3634702..3635340(-) (comA) [Bacillus glycinifermentans strain SRCM103574]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACAAAGGCAATTCTTGAAACGAATCAGGATTT
TCTTGTCGATTGCCTCAGTCCGGAAGCCAGCGAACAATTTCTGACTAAACATGATTTTTCTGCATATGACCTGATCTTAA
TGGATTTGAATCTGGGCGAAATCAACGGAATGGACCTCTCCAAGAAAATCCTTGAGACCTGTTCATCATGCAAAATTATC
GTTTATACCGGATACGAAGTAGAAGATTATTTTGAAGAAGCGATTCGTTCCGGCATGCATGGTGCGATCAGCAAAACAGA
GTCAAAGGAAAAGATTATTGAGTACATATATCAGGTGTTGGATAATAAAATCGTCGTCGATTATGATTACTTAAAAGATC
TGATCACCAAGCAAAAAACAAAATCAAGCAGCCAAGAGACCCAGCATGACGTATTGACTGAAAGAGAACGCCTGATCTTA
AAAGAGGTCGAAAAAGGCTATACGAATCAGGAGATTGCCGATGCGCTGCATCTGAGCAAACGTTCGATCGAATACAGCCT
GACTTCCGTATTTAACAAACTGAATGTCGGATCACGTACGGAAGCTGTATTGATCGCAAAATCCGAAGGCGTACTTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(150-206)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

75.701

100

0.764

Multiple sequence alignment