Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EQZ20_RS00605 Genome accession   NZ_CP035232
Coordinates   111842..113221 (+) Length   459 a.a.
NCBI ID   WP_046128829.1    Uniprot ID   A0AAE2JXS0
Organism   Bacillus glycinifermentans strain SRCM103574     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106842..118221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ20_RS00585 (EQZ20_00585) - 107209..107673 (+) 465 WP_046128826.1 CtsR family transcriptional regulator -
  EQZ20_RS00590 (EQZ20_00590) - 107688..108245 (+) 558 WP_046128827.1 UvrB/UvrC motif-containing protein -
  EQZ20_RS00595 (EQZ20_00595) - 108245..109336 (+) 1092 WP_046128828.1 protein arginine kinase -
  EQZ20_RS00600 (EQZ20_00600) clpC 109333..111765 (+) 2433 WP_006640291.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  EQZ20_RS00605 (EQZ20_00605) radA 111842..113221 (+) 1380 WP_046128829.1 DNA repair protein RadA Machinery gene
  EQZ20_RS00610 (EQZ20_00610) disA 113225..114301 (+) 1077 WP_046128830.1 DNA integrity scanning diadenylate cyclase DisA -
  EQZ20_RS00615 (EQZ20_00615) - 114420..115508 (+) 1089 WP_046128831.1 PIN/TRAM domain-containing protein -
  EQZ20_RS00620 (EQZ20_00620) ispD 115524..116219 (+) 696 WP_046128832.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EQZ20_RS00625 (EQZ20_00625) ispF 116212..116688 (+) 477 WP_046128833.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49717.06 Da        Isoelectric Point: 7.0808

>NTDB_id=336502 EQZ20_RS00605 WP_046128829.1 111842..113221(+) (radA) [Bacillus glycinifermentans strain SRCM103574]
MAKTKTKFICQSCGYESAKWMGKCPGCGAWNTMVEETIKKPAANRRTAFAHSVQRVQKPSPISSIETTEEPRIKTKLGEF
NRVLGDGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADANENVLYISGEESVKQTKLRADRLGINSSTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPSPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPAANADGWTKPKGIEVVGVENVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=336502 EQZ20_RS00605 WP_046128829.1 111842..113221(+) (radA) [Bacillus glycinifermentans strain SRCM103574]
ATGGCTAAAACAAAGACTAAATTTATTTGCCAATCGTGCGGCTATGAGTCCGCCAAGTGGATGGGAAAGTGCCCGGGATG
CGGCGCATGGAACACGATGGTGGAAGAAACGATTAAAAAGCCGGCCGCCAACCGAAGAACCGCTTTTGCACATTCCGTTC
AAAGGGTTCAGAAACCGTCCCCCATCTCATCGATCGAAACGACGGAAGAGCCGCGGATCAAGACGAAACTGGGCGAATTC
AACCGCGTGTTGGGCGATGGAATCGTCAAGGGCTCGCTTGTTTTAATCGGAGGCGATCCCGGCATCGGAAAGTCAACTTT
GCTGCTGCAGGTATCTGCCCAGCTTGCCGATGCAAATGAAAACGTCCTGTACATATCAGGAGAAGAATCTGTCAAACAAA
CGAAGCTGAGAGCGGACCGGCTGGGGATCAACAGTTCAACTCTGCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAACCCTTCATTTGTTGTGGTGGATTCGATTCAAACCGTTTATCAAAGCGACATTACCTCTGC
CCCGGGCAGCGTGTCCCAGGTTAGAGAGTGTACTGCGGAGCTGATGAGGATTGCCAAAACAAAAGGAATTCCGATTTTTA
TCGTCGGGCACGTCACGAAAGAAGGCTCGATTGCCGGACCGAGACTGCTTGAGCATATGGTCGACACCGTCCTTTATTTT
GAAGGGGAGAGGCATCATACTTTCCGGATTTTACGAGCCGTCAAAAACCGGTTCGGTTCGACAAATGAAATGGGGATTTT
TGAGATGAGGGAAGAAGGCCTCACAGAGGTGCTGAACCCGTCGGAAATTTTTCTTGAAGAGCGTTCGGCGGGCGCAGCCG
GATCGAGCGTCGTAGCATCAATGGAAGGGACGAGGCCGGTCCTCGTCGAAATTCAGGCGCTGATTTCGCCGACAAGCTTC
GGCAATCCCCGCAGGATGGCTACCGGGATCGATCATAACCGTGTGTCGCTATTGATGGCCGTGCTGGAAAAAAGGGTCGG
CCTGCTTCTTCAAAACCAGGATGCCTATTTAAAAGTCGCCGGCGGCGTGAAGCTCGATGAACCGGCGATAGACCTCGCCG
TTGCGGTGAGCATTGCGTCAAGCTTCCGGGATACCCCGCCGAGTCCGACCGATTGTTTTATCGGTGAGGTCGGGCTGACA
GGAGAGGTCCGCAGAGTATCGAGAATCGAACAAAGGGTTCAGGAAGCGGCCAAGCTCGGGTTCAAGAGAATGATCATTCC
TGCCGCAAATGCGGACGGATGGACAAAACCGAAAGGAATTGAGGTCGTCGGTGTTGAAAATGTAGCTGAGGCTCTTCGAA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.266

99.782

0.911
  radA Streptococcus mitis NCTC 12261

62.472

98.693

0.617
  radA Streptococcus pneumoniae Rx1

62.472

98.693

0.617
  radA Streptococcus pneumoniae D39

62.472

98.693

0.617
  radA Streptococcus pneumoniae R6

62.472

98.693

0.617
  radA Streptococcus pneumoniae TIGR4

62.472

98.693

0.617
  radA Streptococcus mitis SK321

62.252

98.693

0.614

Multiple sequence alignment