Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | EQZ20_RS00600 | Genome accession | NZ_CP035232 |
| Coordinates | 109333..111765 (+) | Length | 810 a.a. |
| NCBI ID | WP_006640291.1 | Uniprot ID | - |
| Organism | Bacillus glycinifermentans strain SRCM103574 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 104333..116765
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQZ20_RS00585 (EQZ20_00585) | - | 107209..107673 (+) | 465 | WP_046128826.1 | CtsR family transcriptional regulator | - |
| EQZ20_RS00590 (EQZ20_00590) | - | 107688..108245 (+) | 558 | WP_046128827.1 | UvrB/UvrC motif-containing protein | - |
| EQZ20_RS00595 (EQZ20_00595) | - | 108245..109336 (+) | 1092 | WP_046128828.1 | protein arginine kinase | - |
| EQZ20_RS00600 (EQZ20_00600) | clpC | 109333..111765 (+) | 2433 | WP_006640291.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| EQZ20_RS00605 (EQZ20_00605) | radA | 111842..113221 (+) | 1380 | WP_046128829.1 | DNA repair protein RadA | Machinery gene |
| EQZ20_RS00610 (EQZ20_00610) | disA | 113225..114301 (+) | 1077 | WP_046128830.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| EQZ20_RS00615 (EQZ20_00615) | - | 114420..115508 (+) | 1089 | WP_046128831.1 | PIN/TRAM domain-containing protein | - |
| EQZ20_RS00620 (EQZ20_00620) | ispD | 115524..116219 (+) | 696 | WP_046128832.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| EQZ20_RS00625 (EQZ20_00625) | ispF | 116212..116688 (+) | 477 | WP_046128833.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90141.72 Da Isoelectric Point: 5.9765
>NTDB_id=336501 EQZ20_RS00600 WP_006640291.1 109333..111765(+) (clpC) [Bacillus glycinifermentans strain SRCM103574]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLSPDKIQKEVESLIGRGQEMSQSIHY
TPRAKKVTELAMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGGGASGANSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSPEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEETKKTWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELRRNKYVGFNVQDETQNYKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLK
DIVSLMSDQLTKRLKEQDLSIELTEAAKEKIAEEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNITKGQHIVLDVENGE
FVVKTEAKTN
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLSPDKIQKEVESLIGRGQEMSQSIHY
TPRAKKVTELAMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGGGASGANSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSPEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEETKKTWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELRRNKYVGFNVQDETQNYKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLK
DIVSLMSDQLTKRLKEQDLSIELTEAAKEKIAEEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNITKGQHIVLDVENGE
FVVKTEAKTN
Nucleotide
Download Length: 2433 bp
>NTDB_id=336501 EQZ20_RS00600 WP_006640291.1 109333..111765(+) (clpC) [Bacillus glycinifermentans strain SRCM103574]
ATGATGTTTGGAAGATTCACAGAAAGAGCACAAAAAGTATTGGCGCTTGCCCAGGAAGAGGCTCTGCGCCTCGGGCACAA
TAATATTGGAACTGAGCATATCCTGCTGGGACTTGTCCGCGAGGGAGAAGGGATTGCTGCAAAGGCGCTGCAGGCGCTGG
GACTCAGCCCAGATAAAATTCAAAAAGAGGTTGAGAGCCTGATCGGCCGCGGACAGGAAATGTCCCAATCCATTCACTAT
ACACCGAGGGCAAAAAAAGTGACGGAACTCGCGATGGATGAAGCGAGAAAGCTCGGGCACTCATATGTCGGAACCGAACA
CATCCTCCTGGGATTAATTCGTGAAGGCGAAGGCGTCGCTGCCAGAGTGCTGAATAATTTGGGCGTCAGCTTGAATAAAG
CAAGGCAGCAGGTGCTGCAGCTGTTGGGCAGCAATGAGAGCGGAGGCGGCGCGTCAGGGGCAAACAGCAATGCCAACACA
CCTACCTTGGACAGCCTCGCCCGCGATTTGACCGCGATTGCAAAAGAAGACAGCCTCGATCCGGTCATCGGGCGCAGCAA
AGAAATTCAGCGCGTCATCGAAGTACTGAGCCGCAGAACGAAAAACAATCCTGTGTTAATCGGGGAGCCCGGTGTCGGTA
AGACAGCGATAGCTGAAGGCTTAGCCCAGCAGATCATCAATAATGAAGTGCCTGAAATTTTGCGTGACAAGCGGGTGATG
ACGCTTGATATGGGAACGGTAGTTGCAGGTACAAAATACCGCGGGGAATTTGAAGACCGCCTTAAAAAAGTGATGGACGA
AATCCGTCAGGCAGGAAACATCATCCTGTTTATCGATGAACTTCATACACTGATCGGTGCAGGCGGAGCTGAAGGGGCAA
TCGATGCCTCCAATATCCTGAAGCCTTCCCTGGCGCGCGGAGAATTGCAATGCATCGGGGCTACAACCCTTGACGAGTAT
CGCAAATACATTGAAAAAGATGCTGCGCTTGAACGGCGCTTCCAGCCAATTCAGGTAGATCAGCCGTCACCTGAGGAAAG
CATTCAGATTTTGAAAGGGCTGCGGGACCGTTATGAAGCACATCACCGCGTTTCTATCACTGACGAAGCGATCGAAGCGG
CTGTTAAACTGTCAGACCGGTATATTTCCGACCGCTTCCTGCCTGACAAAGCGATCGATTTAATCGATGAGGCCGGTTCA
AAGGTTCGACTGCGTTCATTTACAACGCCTCCTAACCTGAAAGAGCTTGAACAAAAACTCGATGAAGTCCGTAAAGAAAA
AGATGCCGCAGTTCAAAGCCAGGAATTTGAAAAAGCAGCGTCATTGCGCGATACGGAGCAGCGTTTGCGGGAACAGGTAG
AAGAAACCAAGAAAACGTGGAAAGAAAAGCAGGGGCAAGAAAACTCCGAAGTGACGGTTGACGATATTGCGATGGTAGTA
TCAAGCTGGACCGGAGTGCCTGTGTCAAAAATCGCCCAGACTGAAACAGATAAGCTGCTGAATATGGAAAGCATCCTTCA
TTCGCGGGTTATCGGTCAGGATGAAGCGGTTGTCGCTGTTGCGAAAGCAGTAAGACGCGCGCGCGCCGGACTAAAAGATC
CGAAGCGCCCGATCGGCTCGTTTATTTTCCTCGGACCGACCGGCGTCGGTAAAACAGAGCTTGCCCGCGCGCTTGCAGAA
TCGATTTTCGGCGATGAAGAAGCGATGATCCGCATCGATATGTCTGAATATATGGAGAAGCATTCGACATCAAGACTCGT
CGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGACAGCTTACTGAAAAGGTGAGAAGAAAACCTTATTCAGTCG
TCCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCTTCAATATTCTGCTGCAAGTGCTTGAAGACGGCCGTTTGACA
GATTCAAAAGGACGCACTGTTGACTTTAGAAATACAATCCTGATCATGACGTCAAACGTCGGCGCAAGTGAGCTGAGAAG
AAACAAATACGTCGGGTTTAACGTACAGGACGAAACGCAGAACTACAAAGATATGAAAGACAAAGTCATGGGCGAATTAA
AACGCGCCTTCAGACCGGAGTTCATCAACCGGATTGATGAAATTATCGTTTTCCACTCTCTGGAGAAAAAACATTTGAAA
GACATCGTCTCCCTCATGTCAGACCAATTGACAAAGCGTCTGAAAGAACAGGATCTTTCAATTGAATTGACAGAGGCGGC
AAAAGAAAAAATCGCCGAAGAAGGCGTTGACCTTGAATACGGAGCCCGTCCGCTCAGAAGAGCCATCCAGAAACACGTCG
AAGACCGGCTGTCTGAAGAGCTCTTGAAGGGCAACATTACAAAAGGGCAGCATATCGTGCTCGATGTGGAAAACGGAGAG
TTTGTCGTAAAAACCGAAGCTAAAACGAACTAA
ATGATGTTTGGAAGATTCACAGAAAGAGCACAAAAAGTATTGGCGCTTGCCCAGGAAGAGGCTCTGCGCCTCGGGCACAA
TAATATTGGAACTGAGCATATCCTGCTGGGACTTGTCCGCGAGGGAGAAGGGATTGCTGCAAAGGCGCTGCAGGCGCTGG
GACTCAGCCCAGATAAAATTCAAAAAGAGGTTGAGAGCCTGATCGGCCGCGGACAGGAAATGTCCCAATCCATTCACTAT
ACACCGAGGGCAAAAAAAGTGACGGAACTCGCGATGGATGAAGCGAGAAAGCTCGGGCACTCATATGTCGGAACCGAACA
CATCCTCCTGGGATTAATTCGTGAAGGCGAAGGCGTCGCTGCCAGAGTGCTGAATAATTTGGGCGTCAGCTTGAATAAAG
CAAGGCAGCAGGTGCTGCAGCTGTTGGGCAGCAATGAGAGCGGAGGCGGCGCGTCAGGGGCAAACAGCAATGCCAACACA
CCTACCTTGGACAGCCTCGCCCGCGATTTGACCGCGATTGCAAAAGAAGACAGCCTCGATCCGGTCATCGGGCGCAGCAA
AGAAATTCAGCGCGTCATCGAAGTACTGAGCCGCAGAACGAAAAACAATCCTGTGTTAATCGGGGAGCCCGGTGTCGGTA
AGACAGCGATAGCTGAAGGCTTAGCCCAGCAGATCATCAATAATGAAGTGCCTGAAATTTTGCGTGACAAGCGGGTGATG
ACGCTTGATATGGGAACGGTAGTTGCAGGTACAAAATACCGCGGGGAATTTGAAGACCGCCTTAAAAAAGTGATGGACGA
AATCCGTCAGGCAGGAAACATCATCCTGTTTATCGATGAACTTCATACACTGATCGGTGCAGGCGGAGCTGAAGGGGCAA
TCGATGCCTCCAATATCCTGAAGCCTTCCCTGGCGCGCGGAGAATTGCAATGCATCGGGGCTACAACCCTTGACGAGTAT
CGCAAATACATTGAAAAAGATGCTGCGCTTGAACGGCGCTTCCAGCCAATTCAGGTAGATCAGCCGTCACCTGAGGAAAG
CATTCAGATTTTGAAAGGGCTGCGGGACCGTTATGAAGCACATCACCGCGTTTCTATCACTGACGAAGCGATCGAAGCGG
CTGTTAAACTGTCAGACCGGTATATTTCCGACCGCTTCCTGCCTGACAAAGCGATCGATTTAATCGATGAGGCCGGTTCA
AAGGTTCGACTGCGTTCATTTACAACGCCTCCTAACCTGAAAGAGCTTGAACAAAAACTCGATGAAGTCCGTAAAGAAAA
AGATGCCGCAGTTCAAAGCCAGGAATTTGAAAAAGCAGCGTCATTGCGCGATACGGAGCAGCGTTTGCGGGAACAGGTAG
AAGAAACCAAGAAAACGTGGAAAGAAAAGCAGGGGCAAGAAAACTCCGAAGTGACGGTTGACGATATTGCGATGGTAGTA
TCAAGCTGGACCGGAGTGCCTGTGTCAAAAATCGCCCAGACTGAAACAGATAAGCTGCTGAATATGGAAAGCATCCTTCA
TTCGCGGGTTATCGGTCAGGATGAAGCGGTTGTCGCTGTTGCGAAAGCAGTAAGACGCGCGCGCGCCGGACTAAAAGATC
CGAAGCGCCCGATCGGCTCGTTTATTTTCCTCGGACCGACCGGCGTCGGTAAAACAGAGCTTGCCCGCGCGCTTGCAGAA
TCGATTTTCGGCGATGAAGAAGCGATGATCCGCATCGATATGTCTGAATATATGGAGAAGCATTCGACATCAAGACTCGT
CGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGACAGCTTACTGAAAAGGTGAGAAGAAAACCTTATTCAGTCG
TCCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCTTCAATATTCTGCTGCAAGTGCTTGAAGACGGCCGTTTGACA
GATTCAAAAGGACGCACTGTTGACTTTAGAAATACAATCCTGATCATGACGTCAAACGTCGGCGCAAGTGAGCTGAGAAG
AAACAAATACGTCGGGTTTAACGTACAGGACGAAACGCAGAACTACAAAGATATGAAAGACAAAGTCATGGGCGAATTAA
AACGCGCCTTCAGACCGGAGTTCATCAACCGGATTGATGAAATTATCGTTTTCCACTCTCTGGAGAAAAAACATTTGAAA
GACATCGTCTCCCTCATGTCAGACCAATTGACAAAGCGTCTGAAAGAACAGGATCTTTCAATTGAATTGACAGAGGCGGC
AAAAGAAAAAATCGCCGAAGAAGGCGTTGACCTTGAATACGGAGCCCGTCCGCTCAGAAGAGCCATCCAGAAACACGTCG
AAGACCGGCTGTCTGAAGAGCTCTTGAAGGGCAACATTACAAAAGGGCAGCATATCGTGCTCGATGTGGAAAACGGAGAG
TTTGTCGTAAAAACCGAAGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.296 |
100 |
0.963 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.124 |
99.506 |
0.499 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.087 |
100 |
0.479 |
| clpC | Streptococcus thermophilus LMD-9 |
46.966 |
100 |
0.478 |
| clpC | Streptococcus pneumoniae Rx1 |
45.488 |
99.877 |
0.454 |
| clpC | Streptococcus pneumoniae D39 |
45.488 |
99.877 |
0.454 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.365 |
99.877 |
0.453 |
| clpC | Streptococcus mutans UA159 |
43.728 |
100 |
0.452 |
| clpE | Streptococcus mutans UA159 |
53.467 |
80.123 |
0.428 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.276 |
78.642 |
0.411 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.291 |
76.914 |
0.41 |
| clpE | Streptococcus pneumoniae Rx1 |
53.291 |
76.914 |
0.41 |
| clpE | Streptococcus pneumoniae D39 |
53.291 |
76.914 |
0.41 |
| clpE | Streptococcus pneumoniae R6 |
53.291 |
76.914 |
0.41 |