Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EQZ01_RS02195 Genome accession   NZ_CP035231
Coordinates   399714..400163 (-) Length   149 a.a.
NCBI ID   WP_017696127.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 394714..405163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS02155 (EQZ01_02155) - 395038..395235 (+) 198 WP_128737493.1 hypothetical protein -
  EQZ01_RS02160 (EQZ01_02160) yckC 395254..395707 (+) 454 Protein_377 RDD family protein -
  EQZ01_RS02165 (EQZ01_02165) yckD 395789..396121 (+) 333 WP_128737495.1 YckD family protein -
  EQZ01_RS02170 (EQZ01_02170) - 396249..396671 (+) 423 WP_170939093.1 MarR family transcriptional regulator -
  EQZ01_RS02175 (EQZ01_02175) - 396659..397000 (+) 342 WP_032724911.1 DUF3147 family protein -
  EQZ01_RS02180 (EQZ01_02180) - 397019..397747 (+) 729 WP_128737496.1 AAA family ATPase -
  EQZ01_RS02185 (EQZ01_02185) bglC 397819..399252 (+) 1434 WP_128737497.1 6-phospho-beta-glucosidase -
  EQZ01_RS02190 (EQZ01_02190) nin/comJ 399289..399687 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  EQZ01_RS02195 (EQZ01_02195) nucA/comI 399714..400163 (-) 450 WP_017696127.1 DNA-entry nuclease Machinery gene
  EQZ01_RS02200 (EQZ01_02200) tlpC 400331..402052 (-) 1722 WP_128737498.1 methyl-accepting chemotaxis protein TlpC -
  EQZ01_RS02205 (EQZ01_02205) hxlB 402163..402720 (-) 558 WP_128737499.1 6-phospho-3-hexuloisomerase -
  EQZ01_RS02210 (EQZ01_02210) hxlA 402726..403358 (-) 633 WP_101169850.1 3-hexulose-6-phosphate synthase -
  EQZ01_RS02215 (EQZ01_02215) hxlR 403591..403953 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16412.34 Da        Isoelectric Point: 4.5282

>NTDB_id=336425 EQZ01_RS02195 WP_017696127.1 399714..400163(-) (nucA/comI) [Bacillus subtilis strain SRCM103571]
MNITTDIIKTILLVIVIIAAAAAGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=336425 EQZ01_RS02195 WP_017696127.1 399714..400163(-) (nucA/comI) [Bacillus subtilis strain SRCM103571]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATAATAGCAGCTGCAGCTGCCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGAT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment