Detailed information NTG0336041

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EQH51_RS15630
• Genome accession: NZ_CP035210
• Coordinates: 3157798..3158598 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain TH164
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3152798..3163598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH51_RS15595 (EQH51_15765)	gspH	3152954..3153469 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
EQH51_RS15600 (EQH51_15770)	gspI	3153466..3153831 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
EQH51_RS15605 (EQH51_15775)	gspJ	3153828..3154424 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
EQH51_RS15610 (EQH51_15780)	gspK	3154421..3155407 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
EQH51_RS15615 (EQH51_15785)	gspL	3155394..3156587 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
EQH51_RS15620 (EQH51_15790)	-	3156580..3157065 (+)	486	WP_004151943.1	type II secretion system protein M	-
EQH51_RS15625 (EQH51_15795)	-	3157055..3157801 (+)	747	WP_004145897.1	type II secretion system protein N	-
EQH51_RS15630 (EQH51_15800)	pilD	3157798..3158598 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
EQH51_RS15635 (EQH51_15805)	hrpB	3158646..3161075 (-)	2430	WP_032433027.1	ATP-dependent helicase HrpB	-
EQH51_RS15640 (EQH51_15810)	thpR	3161148..3161684 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
EQH51_RS15645 (EQH51_15815)	sfsA	3161684..3162400 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
EQH51_RS15650 (EQH51_15820)	dksA	3162563..3163018 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=336041 EQH51_RS15630 WP_002888947.1 3157798..3158598(+) (pilD) [Klebsiella pneumoniae strain TH164]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=336041 EQH51_RS15630 WP_002888947.1 3157798..3158598(+) (pilD) [Klebsiella pneumoniae strain TH164]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425