Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SGGBAA2069_RS03320 Genome accession   NC_015215
Coordinates   628005..628601 (+) Length   198 a.a.
NCBI ID   WP_013642852.1    Uniprot ID   A0A1H9PP45
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 623005..633601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS03300 (SGGBAA2069_c05900) - 623544..624110 (-) 567 WP_013642847.1 DUF3267 domain-containing protein -
  SGGBAA2069_RS03305 (SGGBAA2069_c05910) - 624359..624880 (+) 522 WP_013642848.1 transcription repressor NadR -
  SGGBAA2069_RS03310 (SGGBAA2069_c05920) - 625077..625631 (+) 555 WP_013642849.1 hypothetical protein -
  SGGBAA2069_RS03315 (SGGBAA2069_c05940) pbp2b 625786..627939 (+) 2154 WP_013642850.1 penicillin-binding protein PBP2B -
  SGGBAA2069_RS03320 (SGGBAA2069_c05950) recR 628005..628601 (+) 597 WP_013642852.1 recombination mediator RecR Machinery gene
  SGGBAA2069_RS03325 (SGGBAA2069_c05960) - 628839..629887 (+) 1049 Protein_584 D-alanine--D-alanine ligase -
  SGGBAA2069_RS03330 (SGGBAA2069_c05970) - 629992..630552 (-) 561 WP_012961655.1 folate family ECF transporter S component -
  SGGBAA2069_RS03335 (SGGBAA2069_c05980) - 630796..632160 (+) 1365 WP_009853760.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SGGBAA2069_RS03340 (SGGBAA2069_c05990) - 632191..633327 (+) 1137 WP_013642854.1 polymerase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.84 Da        Isoelectric Point: 4.5278

>NTDB_id=33602 SGGBAA2069_RS03320 WP_013642852.1 628005..628601(+) (recR) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MLYPTPIAKLIDSFTKLPGIGIKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDEDPCNICTDETRDHS
VILVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVNEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=33602 SGGBAA2069_RS03320 WP_013642852.1 628005..628601(+) (recR) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGCTTTATCCAACACCTATCGCAAAGCTGATTGATAGTTTTACAAAATTACCAGGAATTGGTATAAAAACAGCAACACG
TTTGGCTTTCTACACGATTGGAATGTCAGATGAAGATGTGAATGAATTCGCCAAAAATTTATTGGCAGCTAAGCGTGAAT
TGACTTATTGTTCCGTTTGTGGGAATTTAACAGATGAAGACCCTTGTAATATCTGTACAGATGAAACTCGTGATCATTCC
GTTATTTTAGTGGTTGAAGATTCAAAAGACGTATCTGCCATGGAAAAAATTCAAGAGTATCATGGCTTGTACCATGTCTT
GCATGGCTTGATTTCACCAATGAACGGTGTCGGACCAGATGATATTAATTTGAAATCATTGATTACACGTTTAATGGATA
GTGAGGTCAATGAAGTGATTATTGCAACCAATGCAACCGCAGACGGTGAAGCAACATCTATGTATATCTCACGTGTCCTA
AAACCAGCAGGAATCAAGGTAACACGTTTAGCACGTGGACTGGCTGTTGGCTCAGACATCGAATACGCTGACGAAGTCAC
CCTACTTCGTGCTATCGAAAATCGGACAGAATTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H9PP45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475