Detailed information NTG0335958

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EPO92_RS18155
• Genome accession: NZ_CP035194
• Coordinates: 3684316..3685116 (-)
• Length: 266 a.a.
• NCBI ID: WP_152659807.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain LH102-A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3679316..3690116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPO92_RS18135 (EPO92_18340)	dksA	3679896..3680351 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
EPO92_RS18140 (EPO92_18345)	sfsA	3680514..3681230 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
EPO92_RS18145 (EPO92_18350)	thpR	3681230..3681766 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
EPO92_RS18150 (EPO92_18355)	hrpB	3681839..3684268 (+)	2430	WP_087830637.1	ATP-dependent helicase HrpB	-
EPO92_RS18155 (EPO92_18360)	pilD	3684316..3685116 (-)	801	WP_152659807.1	prepilin peptidase	Machinery gene
EPO92_RS18160 (EPO92_18365)	-	3685113..3685859 (-)	747	WP_087830635.1	type II secretion system protein N	-
EPO92_RS18165 (EPO92_18370)	-	3685849..3686334 (-)	486	WP_004145896.1	type II secretion system protein M	-
EPO92_RS18170 (EPO92_18375)	gspL	3686327..3687520 (-)	1194	WP_087830634.1	type II secretion system protein GspL	-
EPO92_RS18175 (EPO92_18380)	gspK	3687507..3688493 (-)	987	WP_087830633.1	type II secretion system minor pseudopilin GspK	-
EPO92_RS18180 (EPO92_18385)	gspJ	3688490..3689086 (-)	597	WP_032419387.1	type II secretion system minor pseudopilin GspJ	-
EPO92_RS18185 (EPO92_18390)	gspI	3689083..3689448 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
EPO92_RS18190 (EPO92_18395)	gspH	3689445..3689960 (-)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29411.03 Da
• Isoelectric Point: 8.8894

>NTDB_id=335958 EPO92_RS18155 WP_152659807.1 3684316..3685116(-) (pilD) [Klebsiella pneumoniae strain LH102-A]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCAQCRQPIAWRDNMPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=335958 EPO92_RS18155 WP_152659807.1 3684316..3685116(-) (pilD) [Klebsiella pneumoniae strain LH102-A]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCGCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATGCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.679	99.624	0.485
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	45.247	98.872	0.447
pilD	Acinetobacter baumannii D1279779	44.487	98.872	0.44
pilD	Neisseria gonorrhoeae MS11	42.529	98.12	0.417