Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EQJ69_RS19110 Genome accession   NZ_CP035188
Coordinates   3634031..3634765 (-) Length   244 a.a.
NCBI ID   WP_021837755.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103914     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3629031..3639765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ69_RS19075 (EQJ69_19075) fliW 3629182..3629613 (-) 432 WP_011198351.1 flagellar assembly protein FliW -
  EQJ69_RS19080 (EQJ69_19080) - 3629635..3630201 (-) 567 WP_003185702.1 DUF6470 family protein -
  EQJ69_RS19085 (EQJ69_19085) flgL 3630251..3631162 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  EQJ69_RS19090 (EQJ69_19090) flgK 3631173..3632696 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  EQJ69_RS19095 (EQJ69_19095) - 3632712..3633188 (-) 477 WP_003185711.1 flagellar protein FlgN -
  EQJ69_RS19100 (EQJ69_19100) flgM 3633207..3633473 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQJ69_RS19105 (EQJ69_19105) - 3633553..3633972 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  EQJ69_RS19110 (EQJ69_19110) comFC 3634031..3634765 (-) 735 WP_021837755.1 amidophosphoribosyltransferase Machinery gene
  EQJ69_RS19115 (EQJ69_19115) - 3634722..3635006 (-) 285 WP_003185718.1 competence protein ComFB -
  EQJ69_RS19120 (EQJ69_19120) comFA 3635061..3636455 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  EQJ69_RS19125 (EQJ69_19125) - 3636577..3637419 (-) 843 WP_003185726.1 DegV family protein -
  EQJ69_RS19130 (EQJ69_19130) degU 3637539..3638228 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  EQJ69_RS19135 (EQJ69_19135) degS 3638310..3639467 (-) 1158 WP_003185733.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27845.23 Da        Isoelectric Point: 9.4827

>NTDB_id=335848 EQJ69_RS19110 WP_021837755.1 3634031..3634765(-) (comFC) [Bacillus licheniformis strain SRCM103914]
MKTRFAQAIEEGGNKLNCLICAAPLLHSFSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=335848 EQJ69_RS19110 WP_021837755.1 3634031..3634765(-) (comFC) [Bacillus licheniformis strain SRCM103914]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTTTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-76)

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508

Multiple sequence alignment