Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQJ69_RS13215 Genome accession   NZ_CP035188
Coordinates   2539804..2541534 (-) Length   576 a.a.
NCBI ID   WP_003183366.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103914     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2534804..2546534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ69_RS13185 (EQJ69_13185) - 2535259..2535579 (-) 321 WP_034291702.1 hypothetical protein -
  EQJ69_RS23760 - 2535578..2535823 (+) 246 WP_021837567.1 hypothetical protein -
  EQJ69_RS13195 (EQJ69_13195) - 2536067..2536453 (-) 387 WP_009327922.1 serine acetyltransferase -
  EQJ69_RS13200 (EQJ69_13200) - 2536579..2536875 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  EQJ69_RS13205 (EQJ69_13205) spo0A 2537248..2538048 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  EQJ69_RS13210 (EQJ69_13210) spoIVB 2538338..2539654 (-) 1317 WP_044051837.1 SpoIVB peptidase -
  EQJ69_RS13215 (EQJ69_13215) recN 2539804..2541534 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  EQJ69_RS13220 (EQJ69_13220) argR 2541566..2542015 (-) 450 WP_003183369.1 transcriptional regulator ArgR -
  EQJ69_RS13225 (EQJ69_13225) - 2542181..2543026 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -
  EQJ69_RS13230 (EQJ69_13230) dxs 2543023..2544924 (-) 1902 WP_003183372.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EQJ69_RS13235 (EQJ69_13235) - 2545158..2546048 (-) 891 WP_003183374.1 polyprenyl synthetase family protein -
  EQJ69_RS13240 (EQJ69_13240) - 2546038..2546298 (-) 261 WP_011198110.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64524.32 Da        Isoelectric Point: 4.7726

>NTDB_id=335825 EQJ69_RS13215 WP_003183366.1 2539804..2541534(-) (recN) [Bacillus licheniformis strain SRCM103914]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDGGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIENALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAEKLAKQIQQELKDLYMEKSTFDTEFHV
KKAERDDDAPVVNGMPVQLTKHGIDTVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTSG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=335825 EQJ69_RS13215 WP_003183366.1 2539804..2541534(-) (recN) [Bacillus licheniformis strain SRCM103914]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCGATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
AACCGGTGAAACAGGTGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGATCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGGGCCGAATTGGAAGGGCTTTTCCTCCTTGACGGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAGCTGGGGATTGAAGCCTCGGACGACATGATCGTCATGAGAAGAGATATTAACGCAAACGGCAAAAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCATTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTCGCAGGAGAAGAAATCGAGAATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGATGTCATGAAGAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGGCTCGATTTAATACAGTTCCAGCTTGACGAAATCGAATCAGCAAACCTTGAGCCGAAAGAGGACGAGCTTCTTC
AGGAAGAGCGCCGTCAAATTGCAAATTTCGAAAAAATATACGAAGCGCTGCAAAATGCCTATAATGCGCTTCGCAATGAG
CAGGCCGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATTAATGAAGGGCTCAATAAAGT
ATCTGAATCGGTAGCCAACGCTTACTACATTCTCGAAGATTCAACCTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGTTTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGACATCCAAGCTTATTCGGCTAAGATAGAGGAAGAAATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCACGACTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCAGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGG
AAAAGCTGGCCAAACAGATTCAGCAGGAATTGAAAGATCTGTATATGGAAAAATCGACATTTGATACGGAATTTCATGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGAATGCCTGTTCAGCTCACAAAGCACGGCATTGACACCGT
TCGTTTCCTGATCTCCACAAACACGGGAGAACCGCTTAAATCCTTGTCAAAGGTTGCTTCAGGAGGAGAGCTCTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCCGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGACACTGGTGTA
AGCGGAAGAGTCGCGCAGGCGATCGCTGAAAAAATACACCGCGTCTCTATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACAACAACAAGCGTCA
CACCTTTGTCAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATTGCCGGCGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTAAATCAAGCTAAGCTAGTCAAAACCAGCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.25

100

0.813

Multiple sequence alignment