Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AGROH133_RS07020 Genome accession   NC_015183
Coordinates   1432285..1435206 (+) Length   973 a.a.
NCBI ID   WP_041694398.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427285..1440206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGROH133_RS07005 (AGROH133_06136) - 1429476..1430105 (+) 630 WP_003515260.1 MarC family protein -
  AGROH133_RS07010 (AGROH133_06143) - 1430229..1431377 (+) 1149 WP_013636104.1 HPP family protein -
  AGROH133_RS07015 (AGROH133_06149) ssb 1431444..1432019 (-) 576 WP_013636105.1 single-stranded DNA-binding protein Machinery gene
  AGROH133_RS07020 (AGROH133_06150) uvrA 1432285..1435206 (+) 2922 WP_041694398.1 excinuclease ABC subunit UvrA Machinery gene
  AGROH133_RS07025 (AGROH133_06151) - 1435263..1436063 (+) 801 WP_013636107.1 DUF72 domain-containing protein -
  AGROH133_RS07030 (AGROH133_06152) dusA 1436069..1437085 (-) 1017 WP_041694400.1 tRNA dihydrouridine(20/20a) synthase DusA -
  AGROH133_RS07035 (AGROH133_06153) - 1437208..1438281 (+) 1074 WP_013636109.1 site-specific integrase -
  AGROH133_RS07040 - 1438368..1438547 (+) 180 WP_148257312.1 hypothetical protein -
  AGROH133_RS07045 (AGROH133_06154) - 1438552..1438851 (-) 300 WP_041694404.1 hypothetical protein -
  AGROH133_RS07050 (AGROH133_06155) - 1439034..1439288 (-) 255 WP_013636111.1 hypothetical protein -
  AGROH133_RS07055 (AGROH133_06156) - 1439355..1439606 (+) 252 WP_013636112.1 helix-turn-helix transcriptional regulator -
  AGROH133_RS07060 - 1439620..1440063 (+) 444 WP_041694406.1 hypothetical protein -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107191.25 Da        Isoelectric Point: 6.7161

>NTDB_id=33551 AGROH133_RS07020 WP_041694398.1 1432285..1435206(+) (uvrA) [Agrobacterium tumefaciens]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDRIE
GLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPVLDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAVAEFA
DKPLPPEETSAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPTCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINRMHIGEVTQMSIRMARDWFETLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHERIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQALFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKNERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=33551 AGROH133_RS07020 WP_041694398.1 1432285..1435206(+) (uvrA) [Agrobacterium tumefaciens]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGTGCCCGTGAGCATAACCTCAAGGGTATCGATCTGGATCTACCGCGCAA
CAAGCTGATCGTCATGACCGGGCTCTCCGGCTCGGGCAAGTCGTCGCTCGCCTTCGACACAATCTATGCCGAGGGCCAGC
GCCGTTATGTCGAGAGCCTCTCGGCCTATGCGCGCCAGTTCCTCGAAATGATGCAGAAGCCGGATGTAGACCGCATCGAG
GGTCTTTCTCCGGCGATTTCCATCGAGCAGAAAACCACCTCGAAGAACCCGCGCTCCACGGTCGGCACGGTCACGGAAAT
CTACGACTATATGCGCCTGCTGTTTGCGCGTGTCGGCGTGCCCTACTCGCCGGCGACGGGCCTGCCGATCGAGAGCCAGA
CGGTCAGCCAGATGGTCGACCGTATCCTTGCCTTCGAGGAAGGCACGCGCCTTTATATTCTCGCGCCGATCGTGCGCGGC
CGCAAAGGCGAATATAAAAAGGAACTCGCCGAGCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAGATCGCTGACGTTCCCGTCCTCGACAAGAAGTACAAACACGATATCGATGTGGTGGTAGACCGCGCCGTCGTGCGCC
CGGACATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGTTGGCAGTGGCCGAATTTGCC
GACAAGCCCCTGCCGCCGGAAGAAACCTCGGCTGGCGGCTCCGCAAACAAATCGCTCAATGAGACCCACGAGCGTATGCT
GTTTTCGGAAAAATTCGCCTGCCCGGTCTCCGGCTTCACCATCCCGGAAATCGAGCCCCGGCTTTTCTCCTTCAACAATC
CCTTCGGCGCCTGCCCCACCTGTGATGGTCTGGGCTCGCAGCAGAAGGTGGACGAAAACCTCATCGTGCCCGAACCTGCA
CGCACCCTGCGGGATGGCGCGATCGCCCCCTGGGCCAAGTCGTCTTCCCCCTATTACAACCAGACGCTGGAGGCGCTGGG
CAAGGCCTTCGGTTTCAAGCTGTCGAGCAAATGGACGGACCTTTCGAAAGAGGCGCAGCACGCCATTCTCCAGGGCACTG
ACGACAAGATCGAGTTCAACTATCAGGACGGCGCGCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTTCCCAAT
CTGGAGCGTCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGCGAGGAAATCGAGCGTTATATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGCTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAGGATGCACATCGGCGAAGTCACCCAGA
TGTCGATCCGTATGGCACGCGACTGGTTCGAGACGCTGCCGGAAAATCTGAACGCCAAACAGAACGAGATCGCGGTTCGC
ATTCTCAAGGAAATCCGCGAACGTCTGCGATTCCTCAACGATGTCGGGCTGGATTATCTCAGCCTGTCACGCAATTCCGG
CACGCTTTCCGGCGGAGAAAGCCAGCGCATCCGGCTTGCTTCGCAGATCGGCTCCGGCCTCACCGGCGTTCTCTATGTTC
TGGATGAGCCGTCCATCGGCCTGCATCAGCGTGACAATGCCCGTCTGCTCGATACGCTGAAACATCTGCGTGATATCGGC
AATACGGTGATTGTGGTCGAACACGACGAGGATGCCATTCTGACGGCGGATTACGTTGTCGATATCGGCCCCGCCGCCGG
TATTCACGGCGGTCAGGTCATCGCCGAAGGCACGCCGCAGGAAGTGATGGCCAATCCGAAGTCGCTGACCGGCAAATATC
TATCCGGCGAGCTCGGCGTCGCCGTGCCGGCAGAACGCCGCAAGCCGAAGAAGGGCCGCGAAATCAAGGTTTTTGGCGCA
CGCGGCAACAACCTGAAGAATGTGACTGCGGCCGTTCCCCTTGGCGTTTTCACCGCCGTTACCGGCGTGTCGGGTGGTGG
CAAATCCACATTCCTGATCGAGACGCTCTATAAGTCGGCAGCACGCCGGGTGATGGGCGCGCGCGAAATCCCGGCCGAGC
ATGAACGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCAATCGGCCGCACGCCACGATCA
AACCCCGCCACCTACACCGGCGCATTTACGCCTATCCGTGACTGGTTCGCCGGTCTGCCGGAGGCTAAGGCGCGCGGTTA
TGCACCTGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAAGCCTGCCAGGGCGACGGTGTCATCAAGATCGAGA
TGCACTTCCTGCCGGATGTTTATGTCACCTGCGACGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTGGATGTGACC
TTCAAGGGCAAGTCCATTGCCGACGTGCTTGATATGACGGTGGAAGAAGGCGTTGAGTTCTTCGCCGCCGTTCCGGCCGT
GCGTGACAAGCTGCAAGCGCTGTTCGATGTCGGCCTCGGTTACATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAGGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCGAAACGCTCCACCGGCCGCACGCTCTACATTCTCGATGAGCCG
ACGACGGGTCTCCATTTCCACGACGTCAACAAGCTTCTGGAAATGCTGCAGGCGCTGGTGGATCAGGGCAATTCCGTCGT
GGTAATCGAGCACAATCTCGAAGTCATCAAGACGGCCGACTGGATCATCGATATTGGCCCCGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCAACCGGCACGCCGGAAGACATCGTCAAGAACGAGCGATCCTATACCGGCCATTTCCTGAAGGAACTT
CTGGAACGCCGGCCAGCCGGAAAACGCGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae TIGR4

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae D39

57.576

98.356

0.566

Multiple sequence alignment