Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EQI87_RS12695 Genome accession   NZ_CP035166
Coordinates   2440012..2440347 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM103971     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2435012..2445347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI87_RS12675 (EQI87_12675) gcvT 2435604..2436692 (-) 1089 WP_003230205.1 glycine cleavage system aminomethyltransferase GcvT -
  EQI87_RS12680 (EQI87_12680) hepAA 2437134..2438807 (+) 1674 WP_003230203.1 SNF2-related protein -
  EQI87_RS12685 (EQI87_12685) yqhG 2438828..2439622 (+) 795 WP_003230200.1 YqhG family protein -
  EQI87_RS12690 (EQI87_12690) sinI 2439805..2439978 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  EQI87_RS12695 (EQI87_12695) sinR 2440012..2440347 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  EQI87_RS12700 (EQI87_12700) tasA 2440440..2441225 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  EQI87_RS12705 (EQI87_12705) sipW 2441289..2441861 (-) 573 WP_003230181.1 signal peptidase I SipW -
  EQI87_RS12710 (EQI87_12710) tapA 2441845..2442606 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  EQI87_RS12715 (EQI87_12715) yqzG 2442878..2443204 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  EQI87_RS12720 (EQI87_12720) spoIITA 2443246..2443425 (-) 180 WP_029726723.1 YqzE family protein -
  EQI87_RS12725 (EQI87_12725) comGG 2443497..2443871 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  EQI87_RS12730 (EQI87_12730) comGF 2443872..2444255 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  EQI87_RS12735 (EQI87_12735) comGE 2444281..2444628 (-) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  EQI87_RS12740 (EQI87_12740) comGD 2444612..2445043 (-) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  EQI87_RS12745 (EQI87_12745) comGC 2445033..2445329 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=335363 EQI87_RS12695 WP_003226345.1 2440012..2440347(+) (sinR) [Bacillus subtilis strain SRCM103971]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=335363 EQI87_RS12695 WP_003226345.1 2440012..2440347(+) (sinR) [Bacillus subtilis strain SRCM103971]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment