Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EQI56_RS21505 Genome accession   NZ_CP035165
Coordinates   4130027..4130545 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103881     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4125027..4135545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS21475 (EQI56_21475) yyaJ 4125531..4126886 (+) 1356 WP_041850266.1 MFS transporter -
  EQI56_RS21480 (EQI56_21480) maa 4126920..4127474 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  EQI56_RS21485 (EQI56_21485) yyaH 4127490..4127870 (-) 381 WP_015715075.1 VOC family protein -
  EQI56_RS21490 (EQI56_21490) ccpB 4127926..4128861 (-) 936 WP_015715076.1 transcriptional regulator CcpB -
  EQI56_RS21495 (EQI56_21495) xth 4128921..4129679 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  EQI56_RS21500 (EQI56_21500) rpsR 4129744..4129983 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  EQI56_RS21505 (EQI56_21505) ssbA 4130027..4130545 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  EQI56_RS21510 (EQI56_21510) rpsF 4130586..4130873 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  EQI56_RS21515 (EQI56_21515) ychF 4130984..4132084 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  EQI56_RS21520 (EQI56_21520) yyaE 4132211..4134214 (-) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  EQI56_RS21525 (EQI56_21525) yyzM 4134265..4134471 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=335316 EQI56_RS21505 WP_003219228.1 4130027..4130545(-) (ssbA) [Bacillus subtilis strain SRCM103881]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=335316 EQI56_RS21505 WP_003219228.1 4130027..4130545(-) (ssbA) [Bacillus subtilis strain SRCM103881]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment