Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   EQH88_RS19115 Genome accession   NZ_CP035161
Coordinates   3663892..3664233 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain SRCM103862     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3658892..3669233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS19095 (EQH88_19095) hepAB 3659135..3661903 (+) 2769 WP_069703626.1 DEAD/DEAH box helicase -
  EQH88_RS19105 (EQH88_19105) ywpJ 3662029..3662886 (-) 858 WP_069703625.1 phosphatase YwpJ -
  EQH88_RS19110 (EQH88_19110) glcR 3662892..3663668 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  EQH88_RS19115 (EQH88_19115) ssbB 3663892..3664233 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  EQH88_RS19120 (EQH88_19120) ywpG 3664310..3664693 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  EQH88_RS19125 (EQH88_19125) ywpF 3664868..3665278 (+) 411 WP_014481144.1 YwpF-like family protein -
  EQH88_RS19130 (EQH88_19130) - 3665418..3665810 (-) 393 Protein_3698 class A sortase -
  EQH88_RS22000 (EQH88_19135) - 3665797..3666150 (-) 354 WP_250629031.1 prealbumin-like fold domain-containing protein -
  EQH88_RS19140 (EQH88_19140) ywpD 3666058..3666893 (+) 836 Protein_3700 histidine kinase -
  EQH88_RS19145 (EQH88_19145) mscL 3666941..3667336 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  EQH88_RS19150 (EQH88_19150) fabZ 3667409..3667834 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EQH88_RS19155 (EQH88_19155) rapD 3668026..3669090 (+) 1065 WP_029726041.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=334991 EQH88_RS19115 WP_003227798.1 3663892..3664233(-) (ssbB) [Bacillus subtilis strain SRCM103862]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=334991 EQH88_RS19115 WP_003227798.1 3663892..3664233(-) (ssbB) [Bacillus subtilis strain SRCM103862]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment