Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EQH88_RS16685 Genome accession   NZ_CP035161
Coordinates   3167667..3168311 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103862     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3162667..3173311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS16650 (EQH88_16650) mrpB 3163859..3164290 (+) 432 WP_128480829.1 Na(+)/H(+) antiporter subunit B -
  EQH88_RS16655 (EQH88_16655) mrpC 3164290..3164631 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  EQH88_RS16660 (EQH88_16660) mrpD 3164624..3166105 (+) 1482 WP_128480830.1 Na+/H+ antiporter subunit D -
  EQH88_RS16665 (EQH88_16665) mrpE 3166111..3166587 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  EQH88_RS16670 (EQH88_16670) mrpF 3166587..3166871 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  EQH88_RS16675 (EQH88_16675) mnhG 3166855..3167229 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  EQH88_RS16680 (EQH88_16680) yuxO 3167268..3167648 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  EQH88_RS16685 (EQH88_16685) comA 3167667..3168311 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  EQH88_RS16690 (EQH88_16690) comP 3168392..3170704 (-) 2313 WP_069703660.1 histidine kinase Regulator
  EQH88_RS16695 (EQH88_16695) comX 3170720..3170941 (-) 222 WP_014480704.1 competence pheromone ComX -
  EQH88_RS16700 (EQH88_16700) - 3170943..3171806 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  EQH88_RS16705 (EQH88_16705) degQ 3171992..3172132 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  EQH88_RS21925 - 3172354..3172416 (+) 63 Protein_3220 hypothetical protein -
  EQH88_RS16710 (EQH88_16710) - 3172594..3172962 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=334982 EQH88_RS16685 WP_003220716.1 3167667..3168311(-) (comA) [Bacillus subtilis strain SRCM103862]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=334982 EQH88_RS16685 WP_003220716.1 3167667..3168311(-) (comA) [Bacillus subtilis strain SRCM103862]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment