Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SZO_RS05220 Genome accession   NC_012470
Coordinates   1105653..1106498 (-) Length   281 a.a.
NCBI ID   WP_012677974.1    Uniprot ID   A0A6M1KS91
Organism   Streptococcus equi subsp. zooepidemicus     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1100653..1111498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS05205 (SZO_09870) - 1101924..1102637 (-) 714 WP_012677971.1 DUF3307 domain-containing protein -
  SZO_RS05210 (SZO_09880) - 1102658..1103305 (-) 648 WP_012677972.1 SatD family protein -
  SZO_RS05215 (SZO_09890) topA 1103420..1105552 (-) 2133 WP_012677973.1 type I DNA topoisomerase -
  SZO_RS05220 (SZO_09900) dprA 1105653..1106498 (-) 846 WP_012677974.1 DNA-processing protein DprA Machinery gene
  SZO_RS05225 (SZO_09910) - 1106745..1107518 (-) 774 WP_012677975.1 ribonuclease HII -
  SZO_RS05230 (SZO_09920) ylqF 1107508..1108362 (-) 855 WP_012677976.1 ribosome biogenesis GTPase YlqF -
  SZO_RS05235 (SZO_09930) - 1108955..1109587 (-) 633 WP_012677977.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31330.23 Da        Isoelectric Point: 8.8540

>NTDB_id=33470 SZO_RS05220 WP_012677974.1 1105653..1106498(-) (dprA) [Streptococcus equi subsp. zooepidemicus]
MNNFELYKLKKAGLTNLNILNLIDYQQRNNKSLSLRDIAVVSCCKNPVLFIETYKQLNVALLKKEFNQFPSLSILDKQYP
LALREIYNPPVLLFYQGDLSLLEKPKLAVVGSRESSEIGTRSVYKIIKELKNHFVIVSGLARGIDTSAHLACLKAGGQTI
AVIGTGLDRYYPKENHQLQEFLSQRHLVLSEYGAGEAALSYHFPERNRIIAGLSRGVLVVEAKQRSGSLITCQLAMEEGR
DIFVVPDNILNGTSAGCLKLIKDGASCVTHGRDILSEYHYS

Nucleotide


Download         Length: 846 bp        

>NTDB_id=33470 SZO_RS05220 WP_012677974.1 1105653..1106498(-) (dprA) [Streptococcus equi subsp. zooepidemicus]
ATGAATAATTTTGAACTTTATAAATTAAAAAAGGCTGGGCTAACTAATTTAAATATTCTTAACCTGATTGACTACCAGCA
GCGTAATAACAAGTCTCTATCCCTTAGAGATATAGCAGTGGTTTCTTGCTGCAAAAATCCAGTTTTATTTATTGAGACCT
ACAAGCAATTAAATGTTGCCTTGTTAAAAAAGGAATTCAACCAGTTTCCGAGCTTATCTATCCTAGATAAGCAATACCCA
TTGGCCCTGAGGGAAATCTACAATCCTCCTGTTTTACTCTTTTATCAAGGTGATTTAAGCCTGTTAGAAAAGCCTAAGCT
GGCAGTCGTTGGCTCTAGAGAATCCAGTGAAATTGGGACGCGGTCTGTTTACAAAATCATCAAAGAGCTTAAGAATCACT
TTGTCATTGTCAGCGGGCTTGCTAGAGGTATTGATACCAGTGCTCATCTCGCTTGCTTGAAAGCAGGTGGGCAAACCATA
GCTGTTATCGGGACTGGCCTAGATCGCTACTATCCAAAGGAAAATCACCAGCTACAGGAGTTTTTATCTCAGCGTCATCT
CGTGCTCAGTGAATATGGGGCTGGAGAGGCCGCCTTGTCTTATCATTTCCCTGAAAGAAACCGTATTATCGCAGGTCTTA
GTCGAGGTGTCCTTGTTGTTGAGGCTAAGCAGCGCTCTGGCTCTTTGATTACCTGTCAGCTAGCTATGGAAGAGGGACGT
GATATTTTTGTCGTACCTGACAATATTCTTAATGGGACATCGGCGGGCTGTTTGAAGCTGATCAAAGATGGTGCCAGCTG
TGTCACTCATGGCAGAGACATTCTTTCAGAATACCACTATTCTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M1KS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

68.571

99.644

0.683
  dprA/cilB/dalA Streptococcus mitis SK321

59.643

99.644

0.594
  dprA/cilB/dalA Streptococcus pneumoniae D39

59.286

99.644

0.591
  dprA/cilB/dalA Streptococcus pneumoniae R6

59.286

99.644

0.591
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

59.286

99.644

0.591
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

59.286

99.644

0.591
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

58.929

99.644

0.587
  dprA Lactococcus lactis subsp. cremoris KW2

56.584

100

0.566
  dprA Bacillus subtilis subsp. subtilis str. 168

42.4

88.968

0.377

Multiple sequence alignment