Detailed information NTG0334558

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EPY81_RS05980
• Genome accession: NZ_CP035109
• Coordinates: 1231621..1232481 (-)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain NQ-003
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1226621..1237481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPY81_RS05955 (EPY81_06005)	-	1227511..1228821 (+)	1311	WP_002114682.1	tetratricopeptide repeat protein	-
EPY81_RS05960 (EPY81_06010)	-	1228898..1229224 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
EPY81_RS05965 (EPY81_06015)	rlmB	1229327..1230076 (+)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
EPY81_RS05970 (EPY81_06020)	-	1230112..1231026 (+)	915	WP_002115017.1	DMT family transporter	-
EPY81_RS05975 (EPY81_06025)	coaE	1231023..1231619 (-)	597	WP_002115011.1	dephospho-CoA kinase	-
EPY81_RS05980 (EPY81_06030)	pilD	1231621..1232481 (-)	861	WP_002114758.1	prepilin peptidase	Machinery gene
EPY81_RS05985 (EPY81_06035)	pilC	1232481..1233707 (-)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
EPY81_RS05990 (EPY81_06040)	pilB	1233734..1235446 (-)	1713	WP_005804145.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EPY81_RS05995 (EPY81_06045)	tpiA	1235738..1236532 (+)	795	WP_002114826.1	triose-phosphate isomerase	-
EPY81_RS06000 (EPY81_06050)	secG	1236545..1236874 (+)	330	WP_002115012.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=334558 EPY81_RS05980 WP_002114758.1 1231621..1232481(-) (pilD) [Acinetobacter pittii strain NQ-003]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=334558 EPY81_RS05980 WP_002114758.1 1231621..1232481(-) (pilD) [Acinetobacter pittii strain NQ-003]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGCTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437