Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EM806_RS05375 Genome accession   NZ_CP035106
Coordinates   1095892..1096296 (-) Length   134 a.a.
NCBI ID   WP_128480090.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090892..1101296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM806_RS05335 - 1091212..1092273 (-) 1062 WP_128480084.1 hypothetical protein -
  EM806_RS05340 - 1092263..1093048 (-) 786 WP_128480085.1 hypothetical protein -
  EM806_RS05345 - 1093048..1093434 (-) 387 WP_128480086.1 DUF1294 domain-containing protein -
  EM806_RS07560 - 1093548..1093721 (-) 174 WP_205740253.1 hypothetical protein -
  EM806_RS05350 - 1093771..1094037 (-) 267 WP_128480087.1 lysozyme -
  EM806_RS05355 - 1094121..1094444 (-) 324 WP_128480088.1 lysozyme -
  EM806_RS05360 - 1094455..1095015 (-) 561 WP_128480089.1 hypothetical protein -
  EM806_RS05365 - 1094999..1095337 (-) 339 WP_000699911.1 hypothetical protein -
  EM806_RS05370 - 1095526..1095780 (-) 255 WP_276318501.1 tetratricopeptide repeat protein -
  EM806_RS05375 dprB 1095892..1096296 (-) 405 WP_128480090.1 Holliday junction resolvase RuvX Machinery gene
  EM806_RS05380 dprA 1096293..1097093 (-) 801 WP_128480091.1 DNA-processing protein DprA Machinery gene
  EM806_RS05385 minE 1097105..1097338 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  EM806_RS05390 minD 1097335..1098141 (-) 807 WP_128480092.1 septum site-determining protein MinD -
  EM806_RS05395 ilvC 1098166..1099158 (-) 993 WP_128480093.1 ketol-acid reductoisomerase -
  EM806_RS05405 - 1099407..1100189 (+) 783 WP_128480094.1 NAD+ synthase -
  EM806_RS05410 - 1100186..1101124 (+) 939 WP_128480095.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15309.84 Da        Isoelectric Point: 9.5494

>NTDB_id=334502 EM806_RS05375 WP_128480090.1 1095892..1096296(-) (dprB) [Helicobacter pylori strain Hpbs3]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=334502 EM806_RS05375 WP_128480090.1 1095892..1096296(-) (dprB) [Helicobacter pylori strain Hpbs3]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTGCGCTTTTAAATGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATACGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATTGTTTTTATTAATGAAGACAGATCCAGTATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment