Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | EM806_RS00280 | Genome accession | NZ_CP035106 |
| Coordinates | 64142..64717 (+) | Length | 191 a.a. |
| NCBI ID | WP_128479228.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpbs3 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 59142..69717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EM806_RS00255 | uvrD | 59833..61878 (+) | 2046 | WP_205740251.1 | DNA helicase UvrD | - |
| EM806_RS00260 | flgA | 61875..62531 (+) | 657 | WP_128479223.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| EM806_RS00265 | - | 62541..63104 (+) | 564 | WP_128479225.1 | UbiX family flavin prenyltransferase | - |
| EM806_RS00270 | coaD | 63104..63577 (+) | 474 | WP_015086602.1 | pantetheine-phosphate adenylyltransferase | - |
| EM806_RS00275 | tmk | 63579..64154 (+) | 576 | WP_128479227.1 | dTMP kinase | - |
| EM806_RS00280 | comFC | 64142..64717 (+) | 576 | WP_128479228.1 | ComF family protein | Machinery gene |
| EM806_RS00285 | - | 64750..66789 (+) | 2040 | WP_128479230.1 | N-6 DNA methylase | - |
| EM806_RS07640 | - | 66786..68005 (+) | 1220 | Protein_56 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21321.98 Da Isoelectric Point: 9.1280
>NTDB_id=334491 EM806_RS00280 WP_128479228.1 64142..64717(+) (comFC) [Helicobacter pylori strain Hpbs3]
MRCLTCLKLSFKPLCLNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRANNTISYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRANNTISYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=334491 EM806_RS00280 WP_128479228.1 64142..64717(+) (comFC) [Helicobacter pylori strain Hpbs3]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTACCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCTGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTAAACGCTCCCCTTTATGGCATCGCCATTGATGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTGGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGTGCAGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTACCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCTGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTAAACGCTCCCCTTTATGGCATCGCCATTGATGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTGGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGTGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
37.629 |
100 |
0.382 |