Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EM803_RS05455 Genome accession   NZ_CP035105
Coordinates   1105039..1105443 (-) Length   134 a.a.
NCBI ID   WP_017282733.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100039..1110443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM803_RS05410 - 1100199..1101302 (-) 1104 WP_128481505.1 hypothetical protein -
  EM803_RS05415 - 1101292..1102077 (-) 786 WP_128481506.1 hypothetical protein -
  EM803_RS05420 - 1102077..1102463 (-) 387 Protein_1038 DUF1294 domain-containing protein -
  EM803_RS07610 - 1102635..1102784 (-) 150 WP_164878916.1 hypothetical protein -
  EM803_RS07855 - 1102796..1102957 (-) 162 WP_014536434.1 lysozyme -
  EM803_RS05435 - 1102977..1103477 (-) 501 WP_128481508.1 glycoside hydrolase family protein -
  EM803_RS05440 - 1103488..1104048 (-) 561 WP_128481509.1 hypothetical protein -
  EM803_RS05445 - 1104032..1104370 (-) 339 WP_017280149.1 hypothetical protein -
  EM803_RS05450 - 1104560..1104943 (-) 384 WP_276318394.1 tetratricopeptide repeat protein -
  EM803_RS05455 dprB 1105039..1105443 (-) 405 WP_017282733.1 Holliday junction resolvase RuvX Machinery gene
  EM803_RS05460 dprA 1105440..1106240 (-) 801 WP_128481510.1 DNA-processing protein DprA Machinery gene
  EM803_RS05465 minE 1106252..1106485 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  EM803_RS05470 minD 1106482..1107288 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  EM803_RS05475 ilvC 1107307..1108299 (-) 993 WP_128481511.1 ketol-acid reductoisomerase -
  EM803_RS05485 - 1108548..1109330 (+) 783 WP_128481512.1 NAD+ synthase -
  EM803_RS05490 - 1109327..1110265 (+) 939 WP_128481513.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15339.93 Da        Isoelectric Point: 9.5494

>NTDB_id=334481 EM803_RS05455 WP_017282733.1 1105039..1105443(-) (dprB) [Helicobacter pylori strain Hpbs2]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=334481 EM803_RS05455 WP_017282733.1 1105039..1105443(-) (dprB) [Helicobacter pylori strain Hpbs2]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAATGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAACGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment