Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EQG65_RS10600 Genome accession   NZ_CP035101
Coordinates   2097662..2098057 (-) Length   131 a.a.
NCBI ID   WP_001836307.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 12600     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2092662..2103057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQG65_RS10580 (EQG65_10830) thiD 2092702..2093532 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EQG65_RS10585 (EQG65_10835) tenA 2093525..2094214 (-) 690 WP_000396077.1 thiaminase II -
  EQG65_RS10590 (EQG65_10840) - 2094799..2096445 (+) 1647 WP_000277738.1 IS1182-like element ISSau3 family transposase -
  EQG65_RS10595 (EQG65_10845) sceD 2096578..2097273 (-) 696 WP_001836306.1 lytic transglycosylase SceD -
  EQG65_RS10600 (EQG65_10850) ssb 2097662..2098057 (-) 396 WP_001836307.1 single-stranded DNA-binding protein Machinery gene
  EQG65_RS10605 (EQG65_10855) - 2098251..2098691 (+) 441 WP_000846746.1 YwpF-like family protein -
  EQG65_RS10610 (EQG65_10860) fabZ 2098750..2099190 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EQG65_RS10615 (EQG65_10865) murA 2099224..2100489 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EQG65_RS10620 (EQG65_10870) - 2100600..2100833 (-) 234 WP_000384523.1 DUF1146 family protein -
  EQG65_RS10625 (EQG65_10875) - 2100965..2101057 (-) 93 WP_001790611.1 hypothetical protein -
  EQG65_RS10630 (EQG65_10880) - 2101395..2101799 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=334458 EQG65_RS10600 WP_001836307.1 2097662..2098057(-) (ssb) [Staphylococcus aureus strain ATCC 12600]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIRFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=334458 EQG65_RS10600 WP_001836307.1 2097662..2098057(-) (ssb) [Staphylococcus aureus strain ATCC 12600]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAGATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment