Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FYA20_RS05585 Genome accession   NZ_CP043181
Coordinates   1186562..1187299 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O2:H6 strain PG20180057     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181562..1192299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA20_RS05570 (FYA20_05570) clpC 1182016..1184589 (-) 2574 WP_148885869.1 ATP-dependent chaperone ClpB Regulator
  FYA20_RS05575 (FYA20_05575) yfiH 1184719..1185450 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  FYA20_RS05580 (FYA20_05580) rluD 1185447..1186427 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FYA20_RS05585 (FYA20_05585) comL 1186562..1187299 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FYA20_RS05590 (FYA20_05590) raiA 1187570..1187911 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FYA20_RS05595 (FYA20_05595) - 1188062..1188868 (-) 807 WP_000215756.1 site-specific DNA-methyltransferase -
  FYA20_RS05600 (FYA20_05600) - 1188813..1189010 (-) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  FYA20_RS05605 (FYA20_05605) - 1189203..1189499 (-) 297 WP_001519189.1 TM2 domain-containing protein -
  FYA20_RS05610 (FYA20_05610) - 1189635..1189775 (-) 141 WP_000078916.1 Hok/Gef family protein -
  FYA20_RS05620 (FYA20_05620) - 1189966..1190226 (-) 261 WP_047088188.1 ogr/Delta-like zinc finger family protein -
  FYA20_RS05625 (FYA20_05625) - 1190269..1191378 (-) 1110 WP_000132830.1 phage late control D family protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=334398 FYA20_RS05585 WP_000197686.1 1186562..1187299(+) (comL) [Escherichia coli O2:H6 strain PG20180057]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=334398 FYA20_RS05585 WP_000197686.1 1186562..1187299(+) (comL) [Escherichia coli O2:H6 strain PG20180057]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment