Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FXN59_RS02300 Genome accession   NZ_CP043004
Coordinates   435215..436024 (+) Length   269 a.a.
NCBI ID   WP_151294157.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430215..441024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS02290 (FXN59_02290) - 431573..432418 (-) 846 WP_053330008.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  FXN59_RS02295 (FXN59_02295) - 432514..435081 (-) 2568 WP_005581959.1 penicillin-binding protein 1A -
  FXN59_RS02300 (FXN59_02300) comA 435215..436024 (+) 810 WP_151294157.1 competence protein ComA Machinery gene
  FXN59_RS02305 (FXN59_02305) - 436035..436553 (+) 519 WP_148323791.1 PilN domain-containing protein -
  FXN59_RS02310 (FXN59_02310) - 436550..436924 (+) 375 Protein_442 competence protein -
  FXN59_RS02315 (FXN59_02315) pilQ 436923..437868 (+) 946 Protein_443 type IV pilus secretin PilQ -
  FXN59_RS02320 (FXN59_02320) aroK 438082..438609 (+) 528 WP_148327219.1 shikimate kinase AroK -
  FXN59_RS02325 (FXN59_02325) aroB 438633..439721 (+) 1089 WP_151294159.1 3-dehydroquinate synthase -
  FXN59_RS02330 (FXN59_02330) - 439724..440569 (+) 846 WP_148327221.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31446.94 Da        Isoelectric Point: 5.7278

>NTDB_id=334136 FXN59_RS02300 WP_151294157.1 435215..436024(+) (comA) [Aggregatibacter actinomycetemcomitans strain HK_973]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKFAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLMPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLAVQHKLQQTQTLFQTQGNLTALLAQYCQRYEEEPTQVFYYQTEKDAQAIPQSWHAIETE
LPFIELGNALWQRETPLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=334136 FXN59_RS02300 WP_151294157.1 435215..436024(+) (comA) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTCGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCCGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATGCCTTTACAAATTGATGTGTTGGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGCGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACACAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGAAGAAG
AACCGACGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGAGTTAGGTAACGCCTTGTGGCAACGGGAAACGCCGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAATATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.927

96.283

0.394
  comA Haemophilus influenzae 86-028NP

40.927

96.283

0.394